| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,915,022 – 9,915,123 |
| Length | 101 |
| Max. P | 0.730336 |
| Location | 9,915,022 – 9,915,123 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 89.06 |
| Shannon entropy | 0.17643 |
| G+C content | 0.40919 |
| Mean single sequence MFE | -25.52 |
| Consensus MFE | -20.54 |
| Energy contribution | -20.54 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.87 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9915022 101 + 21146708 CCGGCCAAAUUGGAAGCCUUUGGUUCCACUUUGCGAAAACUUUUAAAUUCGCUUAACCAAAUUGACAGCUUUAGGGCCAUUUCAACAUACGUACACGUU-UG-------------- ..((((......(((((..(..(((.......(((((..........))))).......)))..)..)))))..)))).......((.(((....))).-))-------------- ( -22.54, z-score = -1.44, R) >droSim1.chr2R 8353044 101 + 19596830 CCGGCCAAAUUGGAAGCCUUUGGUUCCACUUUGCGAAAACUUUUAAAUUCGCUUAACCAAAUUGACAGCUUUAGGGCCAUUUCAACAUACGUACACGUU-UG-------------- ..((((......(((((..(..(((.......(((((..........))))).......)))..)..)))))..)))).......((.(((....))).-))-------------- ( -22.54, z-score = -1.44, R) >droSec1.super_1 7439749 101 + 14215200 CCGGCCAAAUUGGAAGCCUUUGGUUCCACUUUGCGAAAACUUUUAAAUUCGCUUAACCAAAUUGACAGCUUUAGGGCCAUUUCAACAUACGUACACGUU-UG-------------- ..((((......(((((..(..(((.......(((((..........))))).......)))..)..)))))..)))).......((.(((....))).-))-------------- ( -22.54, z-score = -1.44, R) >droYak2.chr2R 14101203 116 - 21139217 CCGGCCAAAUUGGAAGCCUUUGGUUCCACUUUGCGAAAACUUUUAAAUUCGCUUAACCAAAUUGACAGCUUUAGGGCCAUUUCAACAUACAUACGUAUGGUAUGUAUGUAUGUACG ..((((......(((((..(..(((.......(((((..........))))).......)))..)..)))))..))))......(((((((((((((...)))))))))))))... ( -34.54, z-score = -3.59, R) >droEre2.scaffold_4845 6683133 107 - 22589142 CCGGCCAAAUUGGAAGCCUUUGGUUCCACUUUGCGAAAACUUUUAAAUUCGCUUAACCAAAUUGACAGCUUUAGGGCCAUUUCAACAUACGCUUGUAUG-UAAGUAUG-------- ..((((......(((((..(..(((.......(((((..........))))).......)))..)..)))))..))))......((((((....)))))-).......-------- ( -25.44, z-score = -1.46, R) >consensus CCGGCCAAAUUGGAAGCCUUUGGUUCCACUUUGCGAAAACUUUUAAAUUCGCUUAACCAAAUUGACAGCUUUAGGGCCAUUUCAACAUACGUACACGUU_UG______________ ..((((......(((((..(..(((.......(((((..........))))).......)))..)..)))))..))))...................................... (-20.54 = -20.54 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:39 2011