| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,873,444 – 9,873,544 |
| Length | 100 |
| Max. P | 0.646074 |
| Location | 9,873,444 – 9,873,544 |
|---|---|
| Length | 100 |
| Sequences | 7 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 72.77 |
| Shannon entropy | 0.52017 |
| G+C content | 0.45340 |
| Mean single sequence MFE | -22.92 |
| Consensus MFE | -16.34 |
| Energy contribution | -16.21 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.07 |
| Mean z-score | -0.58 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.33 |
| SVM RNA-class probability | 0.646074 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9873444 100 - 21146708 UCAGUUGCCUCGCACGGCUCCUCGGAAACGAUGUCGCUGGAGGACAACAAGUGAGUAUAUAUCCAUAGUCGGUUACAGUCAAAAUAAUCUUGGUCACAAU--------- ...((((((((.((((((...(((....))).)))).)))))).))))..(((((((.....((......)).)))..((((.......))))))))...--------- ( -28.20, z-score = -1.97, R) >droSim1.chr2R 8310083 107 - 19596830 UCAGUUGCCUCGCACGGCUCCUCGGAAACCAUGUCGCUGGAGGACAAUAAGUGAG--UAUAUCCACAGUCGGUUACAGUCAAAAUAAUGUUGGAUACAAGAUAUACAAU (((((((((((.((((((.....(....)...)))).)))))).))))...)))(--((((((....(((.(..(((..........)))).)))....)))))))... ( -24.20, z-score = -0.25, R) >droSec1.super_1 7399062 109 - 14215200 UCAGUUGCCUCGCACGGCUCCUCGGAAACCAUGUCGCUGGAGGACAAUAAGUGAGUAUAUAUCCACGGUCGGUUACAGUCAAAAUAAUGUUGGAUACAAGAUAUACAAU (((((((((((.((((((.....(....)...)))).)))))).))))...)))(((((((((((((....(((........)))..)).)))))).....)))))... ( -23.80, z-score = 0.21, R) >droYak2.chr2R 14059620 97 + 21139217 UCAGUUGCCUCGCACGGCUCGUCGGAAACCAUGUCGCUGGAGGACAAUAAGUGAGUAGAUAUCCGCAGGCACUUACAGUCAAAAUAAAACUAGAAAC------------ ((((((..(((.((((((.....(....)...)))).)))))(((..((((((.(..(....)..)...))))))..))).......)))).))...------------ ( -21.70, z-score = -0.28, R) >droEre2.scaffold_4845 6641491 109 + 22589142 UCAGUUGCCUCGCACGGCUCAUCGGAGACCAUGUCGCUGGAGGACAAUAAGUGAGUAGAUAUCCACAGCCAGCUACAGUCAAAAUAAUGUUGUAUACAAGAUUUACGAC ...((((((((...((((.(((.(....).)))..)))))))).))))..((((((........(((((...................))))).......))))))... ( -21.87, z-score = 0.76, R) >droAna3.scaffold_13266 17184905 82 - 19884421 UCAGUUGCCUCGCACGGCUCGUCGGAGACCAUGUCGCUGGAGGACAAUAAGUGAGUAAAUCGCAUUAAUCACUUAAAAUUAU--------------------------- ...((((((((.((((((..(((...)))...)))).)))))).))))((((((.(((......))).))))))........--------------------------- ( -21.50, z-score = -1.44, R) >droVir3.scaffold_12875 14500673 80 + 20611582 UCAGUUGCCUCGCACGGCUCAUCGGAGACAAUGUCGCUGGAGGACAAUAAGUGAGCACAC--UUUUUGACACUUUAAAUAUU--------------------------- (((((((((((...((((.(((.(....).)))..)))))))).))))(((((....)))--))..))).............--------------------------- ( -19.20, z-score = -1.06, R) >consensus UCAGUUGCCUCGCACGGCUCCUCGGAAACCAUGUCGCUGGAGGACAAUAAGUGAGUAUAUAUCCACAGUCAGUUACAGUCAAAAUAAUGUUGGAUACAA__________ ...((((((((.((((((.....(....)...)))).)))))).))))............................................................. (-16.34 = -16.21 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:29 2011