Locus 4033

Sequence ID	dm3.chr2R
Location	9,838,337 – 9,838,428
Length	91
Max. P	0.906045

overview

Window 5

Location	9,838,337 – 9,838,428
Length	91
Sequences	12
Columns	91
Reading direction	forward
Mean pairwise identity	88.53
Shannon entropy	0.24991
G+C content	0.63462
Mean single sequence MFE	-43.02
Consensus MFE	-33.24
Energy contribution	-32.69
Covariance contribution	-0.55
Combinations/Pair	1.37
Mean z-score	-2.08
Structure conservation index	0.77
Background model	dinucleotide
Decision model	sequence based alignment quality
SVM decision value	1.18
SVM RNA-class probability	0.906045
Prediction	RNA

Download alignment: ClustalW | MAF

>dm3.chr2R 9838337 91 + 21146708
ACAGUUGCUCCACCAGCGGCCACAUUCUGGGCACUUGGGCUGGUGACGGCGGUGGGAUUGACCGACGAGCCGGGCGCUGGUGGUGCUGCAA
...((.((.(((((((((.((.(.....)(((......((((....)))).((.((.....)).))..))))).))))))))).)).)).. ( -46.50, z-score =  -2.55, R)
>droSim1.chr2R 8272936 91 + 19596830
ACAGUUGCUCCACCAGCGGCCACAUUCUGGGCACUUGGGCUGGUGACGGCGGUGGGAUUGACCGACGAGCCGGGCGCUGGUGGUGCUGCAA
...((.((.(((((((((.((.(.....)(((......((((....)))).((.((.....)).))..))))).))))))))).)).)).. ( -46.50, z-score =  -2.55, R)
>droSec1.super_1 7362611 91 + 14215200
ACAGUUGCUCCACCAGCGGCCACAUUCUGGGCACUUGGGCUGGUGACGGCGGUGGGAUUGACCGACGAGCCGGGCGCUGGUGGUGCUGCAA
...((.((.(((((((((.((.(.....)(((......((((....)))).((.((.....)).))..))))).))))))))).)).)).. ( -46.50, z-score =  -2.55, R)
>droYak2.chr2R 14021817 91 - 21139217
ACAGUUGCUCCACCAGCGGCCACAUUCUGGGCACUUGGACUGGUGACGGCGGUGGGAUUGACCGACGAGCCGGGCGCUGGUGGUGCUGCAA
...((.((.(((((((((.((.((.((..(....)..)).)).....(((.((.((.....)).))..))))).))))))))).)).)).. ( -44.20, z-score =  -2.36, R)
>droEre2.scaffold_4845 6605351 91 - 22589142
ACAGUUGCUCCACCAGCGGCCACAUUCUGGGCACUUGGACUGGUGACGGCGGUGGGAUUGACCGACGAGCCGGGCGCUGGUGGUGCUGUAA
(((((....(((((((((.((.((.((..(....)..)).)).....(((.((.((.....)).))..))))).))))))))).))))).. ( -43.70, z-score =  -2.43, R)
>droAna3.scaffold_13266 17148826 91 + 19884421
ACAGUGGCUCCACCAGCUGCCACAUUCUGGGCACUCGGGCUGGUGACCGCGGUGGGAUUGACCGAUGAGCCGGGCGCCGGUGGUGCUGCAA
...(..((.(((((.((((((........))))....(.(((((.....((((.......))))....))))).))).))))).))..).. ( -39.90, z-score =  -0.05, R)
>dp4.chr3 8152182 91 + 19779522
ACAGUGGCACCCCCAGCUGCCACAUUCUGGGCACUUGGGCUGGUUACAGCGGUGGGAUUGACCGAAGAGCCCGGCGCUGGUGGUGCUGCAA
...(..(((((.(((((.(((.......((((.(((..((((....))))(((.......))).))).)))))))))))).)))))..).. ( -45.41, z-score =  -2.03, R)
>droPer1.super_4 2029684 91 + 7162766
ACAGUGGCACCCCCAGCUGCCACAUUCUGGGCACUUGGGCUGGUUACAGCGGUGGGAUUGACCGAAGAACCCGGCGCUGGUGGUGCUGCAA
...(..(((((.(((((((((........)))).....(((((......((((.......))))......)))))))))).)))))..).. ( -42.30, z-score =  -1.55, R)
>droWil1.scaffold_181009 1329622 91 + 3585778
ACUGUGGCACCGCCGGCAGCAACAUUCUGAGCACUCGGACUGGUCACAGCGGUGGGAUUAACAGAUGACCCAGGUGCUGAUGGUGCUGCAA
..((..((((((.(((((.(..((.(((((....))))).))..........((((.(((.....)))))))).))))).))))))..)). ( -36.20, z-score =  -1.34, R)
>droVir3.scaffold_12875 14388451 91 - 20611582
ACGGUGGCACCGCCGGCAGCAACAUUCUGAGCACUCGGACUGGUCACAGCGGUGGGAUUUACCGAUGAACCGGGCGCUGGUGGUGCUGCAA
...(..(((((((((((.((.....(((((....)))))(((((((...(((((.....))))).)).))))))))))))))))))..).. ( -46.90, z-score =  -3.89, R)
>droMoj3.scaffold_6496 23808882 91 + 26866924
ACCGUGGCACCCCCUGCAGCAACAUUCUGAGCACUCGGACUGGUCACAGCGGUGGGAUUUACCGAAGAACCGGGCGCUGGCGGUGCUGCAA
...(..(((((.((.((.((.....(((((....)))))(((((.....(((((.....)))))....))))))))).)).)))))..).. ( -38.00, z-score =  -1.25, R)
>droGri2.scaffold_15112 4060157 91 - 5172618
ACAGUAGCACCGCCCGCAGCAACAUUCUGAGCACUUGGACUGGUCACGGCGGUGGGAUUUACCGAUGAACCGGGUGUUGGUGGUGCUGCAA
...(((((((((((..(((.......)))(((((((((.(((....)))(((((.....))))).....)))))))))))))))))))).. ( -40.10, z-score =  -2.43, R)
>consensus
ACAGUGGCACCACCAGCGGCCACAUUCUGGGCACUUGGACUGGUGACGGCGGUGGGAUUGACCGACGAGCCGGGCGCUGGUGGUGCUGCAA
...(..((.((((((((.((.....(((((....)))))(((((.....((((.......))))....))))))))))))))).))..).. (-33.24 = -32.69 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:20 2011