| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,815,463 – 9,815,607 |
| Length | 144 |
| Max. P | 0.540526 |
| Location | 9,815,463 – 9,815,607 |
|---|---|
| Length | 144 |
| Sequences | 5 |
| Columns | 159 |
| Reading direction | forward |
| Mean pairwise identity | 88.08 |
| Shannon entropy | 0.20405 |
| G+C content | 0.41194 |
| Mean single sequence MFE | -42.37 |
| Consensus MFE | -26.48 |
| Energy contribution | -27.84 |
| Covariance contribution | 1.36 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.540526 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9815463 144 + 21146708 AUACAUAUAUAUCGAGCUGUUGGGAGGAGCUGGC----AAUUUGCAUGCCAAUCAAGCGAGGAUUU--UAUAGAAGCCUAAGGAACUUGGGCUUUGAUUUA---------AUUGUUUGAACAAAACUUAAUGGUUUAUUAACGAUUGAGUGGACUCACC .............(((((.(((........((((----(.......))))).((((((((......--....((((((((((...))))))))))......---------.)))))))).))).(((((((.(((....))).))))))))).)))... ( -38.23, z-score = -2.34, R) >droSim1.chr2R 8248750 153 + 19596830 ----AUAUAUAUCGAGCUGUUGGGAGGAGCUGGCUGGCAAUUUGCAUGCCAAUCAAGCGAGGAUUU--UAUCGAAGCCCAAGGAACUUGGGCUUUGAUUUAAGACAAUGCAUUGUUUGCACAAAACUUAAUGGUUUAUUAACGAUUGAGUGGACUCACC ----.........(((((.(((......((((..(((((.......)))))..).)))..(..((.--.(((((((((((((...)))))))))))))..))..)..((((.....))))))).(((((((.(((....))).))))))))).)))... ( -49.30, z-score = -3.45, R) >droSec1.super_1 7340167 149 + 14215200 ----AUAUAUAUCGAGCUGUUGGGAGGAGCUGGC----AAUUUGCAUGCCAAUCAAGCGAGGAUUU--UAUCGAAGCCCAAGGAACUUGGGCUUUGAUUUAAGACAAUGCAUUGUUUGCGCAAAACUUAAUGGUUUAUUAACGAUUGAGUGGGCUCACC ----.........(((((........((..((((----(.......))))).))..((..(..((.--.(((((((((((((...)))))))))))))..))..)...(((.....)))))...(((((((.(((....))).))))))).)))))... ( -50.10, z-score = -3.55, R) >droYak2.chr2R 13998798 149 - 21139217 ----AUAUAUAUCGAGCAUUGGGGAGGAGCGGGC----AAUUUGCAUGCCAAUCAAGCGAGGAUUUCAUAUAGAAACCUAAGGAACU-GGGCUUUGAUUUAAGGCAG-GCAUUGUUUGCACAAAACUUAAUGGUUUAUUAGCGAUUGAGUGGACUCACC ----................((.(((..((((((----((..(((.((((((((((((..((.((((...(((....))).))))))-..)).))))))...)))).-))))))))))).....(((((((.(((....))).)))))))...))).)) ( -40.40, z-score = -1.79, R) >droEre2.scaffold_4845 6582710 145 - 22589142 ------AUAUAUCGAACUGUGGAGAGGAGCUGGC----AAUUUGCAUGCCAGUCAAGCGAGGACUU--UAUAGAAACCUAAG-AACCUGGGCUUUGAUUUAAGGCAG-GCAUUGUUUGCACAAAACUUAAUGGUUUAUUAACGAUAAAGUGGACUCACC ------...(((((...((((.(((.(((((.((----.....)).((((((((((((.(((..((--(.(((....))).)-))))).).).))))))...)))))-)).)).))).))))(((((....))))).....)))))..(((....))). ( -33.80, z-score = -0.10, R) >consensus ____AUAUAUAUCGAGCUGUUGGGAGGAGCUGGC____AAUUUGCAUGCCAAUCAAGCGAGGAUUU__UAUAGAAGCCUAAGGAACUUGGGCUUUGAUUUAAGACAA_GCAUUGUUUGCACAAAACUUAAUGGUUUAUUAACGAUUGAGUGGACUCACC .............(((.((((.(((.((((..........(((((.((.....)).)))))...........((((((((((...)))))))))).............)).)).))).))))..(((((((.(((....))).)))))))...)))... (-26.48 = -27.84 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:13 2011