| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,807,897 – 9,807,994 |
| Length | 97 |
| Max. P | 0.837872 |
| Location | 9,807,897 – 9,807,994 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 64.56 |
| Shannon entropy | 0.63633 |
| G+C content | 0.32216 |
| Mean single sequence MFE | -18.77 |
| Consensus MFE | -8.90 |
| Energy contribution | -8.68 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.46 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.86 |
| SVM RNA-class probability | 0.837872 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9807897 97 - 21146708 ------UGGGAAUUUUGUUUUUUGUUUUUUUUUUGU-UGACUUGCAGAUAAAAGCGGGAAGUACUUUGAAUUCAAUUUGAAGUGCAUUUUCCUAUGCUAAUAGU ------((((((......(((((((((((..(((((-......))))).)))))))))))((((((..(((...)))..))))))...)))))).......... ( -24.90, z-score = -2.92, R) >droEre2.scaffold_4845 6575467 79 + 22589142 ------------------------AGAGAAUUUUGU-UGACUUUCAGAUAAAAGCGGGAAGUACUUUGAAUCCCAUUUGAUGUGCAUUCGCUUACUUUAAUAGU ------------------------((((....((((-(........)))))(((((((..((((.(..(((...)))..).)))).))))))).))))...... ( -12.90, z-score = 0.08, R) >droYak2.chr2R 13991548 79 + 21139217 ------------------------AGGGAAUUUUGU-UGACUUGUUGAUAAAAGCGGGAAGUACUUUGAAUUCCAUUUGAAGUGCAUUUCCUUACGUUAAUAGU ------------------------........((((-((((..(((......)))(((((((((((..(((...)))..)))))).)))))....)))))))). ( -20.60, z-score = -2.66, R) >droSec1.super_1 7332911 88 - 14215200 ------UGGGAAUUUUGU--------UUUUUUUUGU-UGACUUGCAGAUAAAAGCGGGAAGUACUU-GAAUUUCAUAUGAAGUGCAUUUCCUUACGCUAAUAGU ------.(((((((((((--------((((.(((((-......))))).)))))))))).((((((-.(........).))))))..)))))............ ( -20.40, z-score = -1.81, R) >droSim1.chr2R 8241526 91 - 19596830 ------UGGGAAUUUGGU------UUUUUUUUUUGU-UGACUUGCAGAUAAAAGCGGGAAGUACUUGGAAUUCCAUUUGAAGUGCAUUUCCUUACGCUAAUAGU ------.((((((((.((------((((...(((((-......))))).)))))).))).((((((.((((...)))).))))))..)))))............ ( -20.70, z-score = -1.16, R) >triCas2.ChLG4 9156416 104 - 13894384 AAGGACUUAGGUGUACUUGUACUUGUACUCUCUUGUAUGCGUUUUACAAAAGAUUGUAACAUUGAUUAGUUUAAAUUUGAAUUAUGUUUUACUAUAUUAUCAGU ..(((((..(((((((..(((....)))(((.(((((.......))))).)))..)).)))))....)))))....((((...((((......))))..)))). ( -13.10, z-score = 1.47, R) >consensus ______UGGGAAUUU_GU______AUUUUUUUUUGU_UGACUUGCAGAUAAAAGCGGGAAGUACUUUGAAUUCCAUUUGAAGUGCAUUUCCUUACGCUAAUAGU ..............................((((((.((.....)).))))))..((((((((((((((((...)))))))))))..)))))............ ( -8.90 = -8.68 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:12 2011