| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,805,348 – 9,805,417 |
| Length | 69 |
| Max. P | 0.698920 |
| Location | 9,805,348 – 9,805,417 |
|---|---|
| Length | 69 |
| Sequences | 14 |
| Columns | 69 |
| Reading direction | forward |
| Mean pairwise identity | 94.43 |
| Shannon entropy | 0.12825 |
| G+C content | 0.40269 |
| Mean single sequence MFE | -12.50 |
| Consensus MFE | -11.49 |
| Energy contribution | -11.73 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.92 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.698920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9805348 69 + 21146708 CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUCUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) ( -12.90, z-score = -1.47, R) >droSim1.chr2R 8238575 69 + 19596830 CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUCUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) ( -12.90, z-score = -1.47, R) >droSec1.super_1 7330353 69 + 14215200 CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUCUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) ( -12.90, z-score = -1.47, R) >droYak2.chr2R 13988983 69 - 21139217 CUCACCUUUUUCAGAUGUUUGUUCACCCAUUUUGUGAAAGUCUUCUUCUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) ( -12.90, z-score = -1.29, R) >droEre2.scaffold_4845 6572931 69 - 22589142 CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUCUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) ( -12.90, z-score = -1.47, R) >droAna3.scaffold_13266 17105976 69 + 19884421 CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUCUGAAUGGCAUCGCGUUCAUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) ( -13.30, z-score = -1.81, R) >dp4.chr3 8078944 69 + 19779522 CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAUGUCUUCUUCUGAAUGGCAUCGCGCUCGUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) ( -11.90, z-score = -1.08, R) >droPer1.super_4 1993070 69 + 7162766 CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAUGUCUUCUUCUGAAUGGCAUCGCGCUCGUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) ( -11.90, z-score = -1.08, R) >droWil1.scaffold_181009 2183216 69 - 3585778 CUCACCUUUUUAAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUUUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((((....)))))))))))....)))..))))) ( -13.60, z-score = -2.02, R) >droVir3.scaffold_12875 14348143 69 - 20611582 CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUUUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((((....)))))))))))....)))..))))) ( -13.60, z-score = -1.88, R) >droMoj3.scaffold_6496 23767941 69 + 26866924 CUCACCUUUUUAAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUUUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((((....)))))))))))....)))..))))) ( -13.60, z-score = -2.02, R) >droGri2.scaffold_15112 4020986 69 - 5172618 CUCACCUUUUUAAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUUUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((((....)))))))))))....)))..))))) ( -13.60, z-score = -2.02, R) >anoGam1.chr3L 22841172 69 + 41284009 CUUACCUUUUUCAGAUGUUUGUUGACCCACUUCGUGAAAGUUUUCUUCUGUAUGGCAUCUCGCUCAUCU ............(((((..((..((.(((...((.(((.......)))))..)))..)).))..))))) ( -7.00, z-score = 0.79, R) >triCas2.ChLG7 7171546 69 + 17478683 CUUACCUUUUUCAGAUGUUUGUUGACCCAUUUCGUGAACGUUUUCUUCUGAACAGCGUCGCGUUCGUCU .......................(((......(((((.(((((((....))).)))))))))...))). ( -12.00, z-score = -0.51, R) >consensus CUCACCUUUUUCAGAUGUUUGUUAACCCAUUUUGUGAAAGUCUUCUUCUGAAUGGCAUCGCGUUCGUCU ............(((((..(((....((((((...(((....)))....))))))....)))..))))) (-11.49 = -11.73 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:11 2011