| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,785,978 – 9,786,049 |
| Length | 71 |
| Max. P | 0.989295 |
| Location | 9,785,978 – 9,786,049 |
|---|---|
| Length | 71 |
| Sequences | 6 |
| Columns | 72 |
| Reading direction | reverse |
| Mean pairwise identity | 69.85 |
| Shannon entropy | 0.56117 |
| G+C content | 0.32461 |
| Mean single sequence MFE | -13.35 |
| Consensus MFE | -7.09 |
| Energy contribution | -6.10 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.60 |
| Mean z-score | -2.05 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.36 |
| SVM RNA-class probability | 0.989295 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9785978 71 - 21146708 AAGCAACCAGCUUGUGCCUGCUACGAAAAUAUUUGUUUGCAAAUAUUUAGGAGGCAAUUACCAU-AUUGUUU ((((.....)))).(((((.(((....((((((((....))))))))))).)))))........-....... ( -18.60, z-score = -2.17, R) >droSim1.chr2R 8219901 65 - 19596830 AACCAACCGAAA------AAAUACGAAAAUAUUUGUUAGCAAAUAUUUAGAAGGCAAUUACCAU-AUUGUUU ............------........(((((((((....)))))))))...(((((((......-))))))) ( -9.20, z-score = -2.19, R) >droSec1.super_1 7312884 65 - 14215200 AACCAACCGCAA------AAAUACGAAAAUAUUUGUUAGCAAAUAUUUAGAAGACAAUUACCAA-AUUGUUU ............------........(((((((((....)))))))))...((((((((....)-))))))) ( -10.10, z-score = -3.70, R) >droYak2.chr2R 13971442 71 + 21139217 AACCAACCAGAAUGUGCCUGCUUCGAAAAUAUUUGUUUGCAAAUAUUUAGGAGGCAAUUACCAU-AUUGUUC ..........((((((..((((((..(((((((((....)))))))))..)))))).....)))-))).... ( -17.30, z-score = -2.60, R) >droEre2.scaffold_4845 6555341 71 + 22589142 AACCAACCAGAUUGUGCCUGCUUCGAAAAUAUUUGUUUGCAAAUAUUUAGGAGGCAAUUACCAU-AUUAUUC .............(((..((((((..(((((((((....)))))))))..))))))..)))...-....... ( -16.30, z-score = -2.58, R) >dp4.chr3 8062081 68 - 19779522 AUGUAAAUAUGG---GUUCAAUCAACUCUUACUUGUACUUAGAUA-GAAGAAAGCGAUUUCCAUGGCCGCUC ..((...(((((---(...((((....(((.(((.((......))-.))).))).))))))))))...)).. ( -8.60, z-score = 0.96, R) >consensus AACCAACCAGAA___GCCUAAUACGAAAAUAUUUGUUUGCAAAUAUUUAGAAGGCAAUUACCAU_AUUGUUC ..........................(((((((((....)))))))))....((((((.......)))))). ( -7.09 = -6.10 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:09 2011