| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,785,676 – 9,785,770 |
| Length | 94 |
| Max. P | 0.662457 |
| Location | 9,785,676 – 9,785,770 |
|---|---|
| Length | 94 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 72.31 |
| Shannon entropy | 0.47634 |
| G+C content | 0.43437 |
| Mean single sequence MFE | -18.40 |
| Consensus MFE | -9.92 |
| Energy contribution | -9.03 |
| Covariance contribution | -0.89 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.662457 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9785676 94 + 21146708 --------CUCCAACGCUCGAGGCGAAGGCAACACCUUCGAAAAGCCUCAAUAGAUCCCAAAACAACAAAUUCGGAUUACUUUGAAAUGGAUCAACUACAUA-------- --------.((((......((((((((((.....))))).....)))))....(((((...............))))).........))))...........-------- ( -19.96, z-score = -2.59, R) >droSim1.chr2R 8219593 94 + 19596830 --------CUCCAACGCUCGAGGCGAAGGCAACACCUCCGAAAAGCCUCGACAGAUCCCAAAACAACAAAUUCGGAUUACUUUGAAAUGGAUCAACUACAUA-------- --------.((((..(.(((((((...((........)).....)))))))).(((((...............))))).........))))...........-------- ( -20.06, z-score = -2.21, R) >droSec1.super_1 7312570 94 + 14215200 --------CUCCAACACUCGAGGCGAAGGCAACACCUCCGAAAAGCCUCAAUAGAUCCCAAAACAACAAAUUCGGAUUACUUUGAAAUGGAUCAACUACAUA-------- --------.((((......(((((...((........)).....)))))....(((((...............))))).........))))...........-------- ( -16.86, z-score = -1.88, R) >droYak2.chr2R 13971103 94 - 21139217 --------CUUUAACGCUCGAGGCGAAGGCAACACCUUCGAAAAGCCCCAAAAGAUCCCAAAACAACAAAUUCGGAUAACUUUGAAGUGGAUCAACUUCAUA-------- --------((((...(((.....((((((.....))))))...)))....))))((((...............)))).....((((((......))))))..-------- ( -18.16, z-score = -1.17, R) >droEre2.scaffold_4845 6554977 94 - 22589142 --------CUCCAACGCUCGAGGCGAAGGCAACACCUUCGAAAAGCCCCAACAGAUCCCAAAACAACAAAUUCGGAUUACUUUGAAAUGGAUCAACUACAUA-------- --------.((((....((((((((((((.....)))))).............(((((...............))))).))))))..))))...........-------- ( -18.16, z-score = -1.94, R) >dp4.chr3 8061814 108 + 19779522 CUCCUAAAAUCUGGC-CUCGGUACGAAGGCAACGCCUCUGAAAGUCUGCCGAAGAUUCCCAAGCUACCA-UUUGGCACACAUUGAAUCACUUAAAAAAAUUAAUCACAGA .........((((..-.((((((.((((((...)))).......)))))))).(((((....((((...-..)))).......)))))..................)))) ( -19.51, z-score = -0.36, R) >droPer1.super_4 1975371 106 + 7162766 CUCCUAAAAUCUGGC-CUCGGUACGAAGGCAACGCCUCUGAAAGUCUGCCGAAGAUUCCCAAGCUACCA-UUUGGCACAUAUUGAAUCACUUAAAAAAAUUAAUCACA-- ..((........)).-.((((((.((((((...)))).......)))))))).(((((....((((...-..)))).......)))))....................-- ( -16.11, z-score = 0.45, R) >consensus ________CUCCAACGCUCGAGGCGAAGGCAACACCUCCGAAAAGCCUCAAAAGAUCCCAAAACAACAAAUUCGGAUUACUUUGAAAUGGAUCAACUACAUA________ .........((((....((((((((.(((.....))).)).............(((((...............))))).))))))..))))................... ( -9.92 = -9.03 + -0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:08 2011