| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,776,945 – 9,777,058 |
| Length | 113 |
| Max. P | 0.677430 |
| Location | 9,776,945 – 9,777,058 |
|---|---|
| Length | 113 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 71.45 |
| Shannon entropy | 0.55404 |
| G+C content | 0.44979 |
| Mean single sequence MFE | -32.13 |
| Consensus MFE | -15.16 |
| Energy contribution | -14.70 |
| Covariance contribution | -0.46 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9776945 113 + 21146708 CUUUGGUGUGAUUUGUGCUGCCUCGGUAGCGGUUUCCUUGUAAUCCGGCUCAGGAGUAGGAUCUUUUUUAAUAGAUUCAGGAAAUUCUGUAUUUUGAGCUGGAUCGGGAGUUG ...............((((((....))))))..(((((....(((((((((((((...((((((........)))))).((.....))...))))))))))))).)))))... ( -35.50, z-score = -2.24, R) >droSim1.chr2R 8211253 113 + 19596830 CUUUGGUGUGAUUUGUGCUGGCUCGGUAAUGUUCUCCUUGUAAUCCGGUUCAGGAGUUGGAUCUUUUUUAACAGAUUCAACGAAUUCUGCAUUUUGCGCUGGCUCGGGAGUUA ...........((((.((..((.(((.(((((...........(((......)))(((((((((........))))))))).......)))))))).))..)).))))..... ( -28.60, z-score = -0.31, R) >droSec1.super_1 7303810 113 + 14215200 CUUUUGUGUGAUUUGUGCUGGCUCGGUAGUGUUCUCCUUGUAAUCCGGCUCAGGAGUUGGAUCUUUUUUAACAGAUUCAACGAAUUCUGCAUUUUGGGCUGGCUCGGGAGUUA ...........((((.((..(((((((((.((((((((.((......))..))))(((((((((........))))))))))))).))))....)))))..)).))))..... ( -34.70, z-score = -1.95, R) >droYak2.chr2R 13962410 113 - 21139217 UUUUGAUGUAAUCUGUGCUAGCUGUGUAGUGUUUUCCUUGUAUUCCGGCUUAGGAGUUAGAUCUUUCUUAACUGAUUCGGUGAAUUCUGCAUUUGGAGCUGGCUCGGGAGUUA ...........((((.(((((((((((((.((((.((......(((......)))((((((....)).))))......)).)))).))))))....))))))).))))..... ( -31.10, z-score = -1.49, R) >droEre2.scaffold_4845 6546319 113 - 22589142 UUUCGGUGUGAUCUGCGCUGGCUCUCUAGUGCUCUUCUUGGAAUCCGGCUCGGGAGUUAGAUCUUUUUUAACUGAUGCGGUGGAUUCUGCAUUUUGGGCUGGCUCGGGAGUUA ...........((((.((..((((...(((((.......((((((((.(.((..(((((((.....)))))))..)).).)))))))))))))..))))..)).))))..... ( -40.01, z-score = -2.32, R) >anoGam1.chr3L 22774396 95 + 41284009 CUUUUCAGUGUCUUGUUCAGC--------UGGCAUCUUUAGA-----GCACUGGAGUCAACCAUCGGUUG--CGAUUGAGCAAAUUG---AUUAGCAGUUGGAUCCAGAAUCU ((((..((((((.........--------.)))).))..)))-----)..(((((..((((.((((((((--(......)).)))))---)).....))))..)))))..... ( -22.90, z-score = 0.38, R) >consensus CUUUGGUGUGAUUUGUGCUGGCUCGGUAGUGUUCUCCUUGUAAUCCGGCUCAGGAGUUAGAUCUUUUUUAACAGAUUCAGCGAAUUCUGCAUUUUGAGCUGGCUCGGGAGUUA ...................(((........)))(((((......(((((((((((((((((.....)))))).((((.....)))).....)))))))))))...)))))... (-15.16 = -14.70 + -0.46)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:07 2011