| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,719,611 – 9,719,703 |
| Length | 92 |
| Max. P | 0.990451 |
| Location | 9,719,611 – 9,719,703 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 92.59 |
| Shannon entropy | 0.12610 |
| G+C content | 0.43178 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -25.50 |
| Energy contribution | -25.26 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.53 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.42 |
| SVM RNA-class probability | 0.990451 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9719611 92 + 21146708 UAUAGCCAUGAGAUCCCUAUGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAU ..((((((((((((((...(((.......)))..))))))).((....(((((.(....))))))......)))))))))............ ( -26.40, z-score = -2.00, R) >droYak2.chr2R 13904990 88 - 21139217 UGCAGCCAUGA--UCCCUAAGAAACACUUUCAUCGGAUUUCCACGAAAUUCUGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAU--AUAAAU ..((((((((.--......((...(((((((..((((((((...)))).))))..)))))))...)).....))))))))....--...... ( -30.00, z-score = -3.40, R) >droEre2.scaffold_4845 6488826 90 - 22589142 UACAGCCAUGA--UCCCUAAGAAACAUUUUCAACGGAUUUCCACGAAAUUCUGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAU ..((((((((.--......((...(((((((..((((((((...)))).))))..)))))))...)).....))))))))............ ( -27.30, z-score = -3.36, R) >droSec1.super_1 7246654 92 + 14215200 UAUAGCCAAGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGUGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAU ..((((((................((((((((.((((((((...)))).)))).))))))))..((.....)).))))))............ ( -24.40, z-score = -1.76, R) >droSim1.chr2R 8159633 92 + 19596830 UAUAGCCAUGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAU ..((((((((.........((...(((((((..((((((((...)))).))))..)))))))...)).....))))))))............ ( -26.24, z-score = -2.10, R) >consensus UAUAGCCAUGAGAUCCCUAAGAUACAUUUUCAACGGAUUUCCGCGAAAUUCCGGCGGAAGUGGAGCUGCUAGCAUGGCUGAUAUACAUAAAU ..((((((((.........((...(((((((..((((((((...)))).))))..)))))))...)).....))))))))............ (-25.50 = -25.26 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:21:02 2011