| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,699,016 – 9,699,107 |
| Length | 91 |
| Max. P | 0.810063 |
| Location | 9,699,016 – 9,699,107 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 80.62 |
| Shannon entropy | 0.38508 |
| G+C content | 0.29338 |
| Mean single sequence MFE | -14.75 |
| Consensus MFE | -11.57 |
| Energy contribution | -11.24 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.24 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.76 |
| SVM RNA-class probability | 0.810063 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 9699016 91 + 21146708 UUAACCGAUAUAU---ACU--AUAACUAACUAUACUAUG--UAUAACUCGUAUAUAAA--UCUAGCUAA-UAUGGUCUAGGACCAUGG-CAUUCUUUAGCAA-- .......((((((---(.(--(((......)))).))))--)))..............--....(((((-(((((((...))))))).-......)))))..-- ( -15.31, z-score = -1.10, R) >droGri2.scaffold_15245 1809059 90 + 18325388 UUAACCGAUAUAC---UUAAUAUAACUAAUUAUAC--------CUACUCGUAUAUAAC--ACUAGCUAA-CAUGGUCUAGGACCAUGCUAUUUUAUUAGCAAAU .......((((((---....(((((....))))).--------......))))))...--....(((((-(((((((...)))))))........))))).... ( -13.80, z-score = -1.82, R) >droMoj3.scaffold_6496 8008759 86 - 26866924 UUAAUCGAUAUAA---CUUAUAUAACUAACUA------------UACUCGUAUAUAAC--UCUAGCUAA-UAUGGUCUAGGACCAUACUAUUUUAUUAGCAAAU .......(((((.---....((((......))------------))....)))))...--....(((((-(((((((...)))))........))))))).... ( -11.60, z-score = -1.04, R) >droVir3.scaffold_12875 8360308 88 + 20611582 UUAACCGAUAUAC---UUA-UAUAAAUAACUAUAC--------CUACUCGUAUAUAAC--UCUAGCUAA-CAUGGUCUAGGACCAUGAUGUUUUAUUAGCAAA- .............---...-..........(((((--------......)))))....--....(((((-(((((((...)))))))........)))))...- ( -13.50, z-score = -1.21, R) >droPer1.super_4 3198199 99 + 7162766 UUAACCAAAAUAU---AUCCAAUAACUAACUAUUAUAGUACUAUAACUAGUAUAUAAAACUCUAGCUAAACAUGGUCUAGGACCAUGGGCAUUCUUUAGCAA-- .............---................(((((.(((((....)))))))))).......(((((((((((((...))))))).......))))))..-- ( -17.01, z-score = -1.61, R) >dp4.chr3 5371328 99 - 19779522 UUAACCAAAAUAU---AUCCAAUAACUAACUAUUAUAGUACUAUAACUAGUAUAUAAAACUCUAGCUAAACAUGGUCUAGGACCAUGGGCAUUCUUUAGCAA-- .............---................(((((.(((((....)))))))))).......(((((((((((((...))))))).......))))))..-- ( -17.01, z-score = -1.61, R) >droAna3.scaffold_13266 17000883 93 + 19884421 UUAACCGAUAUAUCGUAUACUCUAACUAACUAUAC------UAUAACUCGUAUAUAAA--UCUAGCUAAACAUGGUCUAGGACCAUGG-CAUUCUUUAGCAA-- .....(((..(((.(((((...........)))))------.)))..)))........--....(((((((((((((...))))))).-.....))))))..-- ( -16.50, z-score = -1.93, R) >droEre2.scaffold_4845 6468120 87 - 22589142 UUAACCGAUAUAU---AAU--AUAACUAACUAUAC------UAUAACUCGUAUAUAAA--UCUAGCUAA-UAUGGUCUAGGACCAUGG-CAUUCUUUAGCAA-- .....(((..(((---(.(--(((......)))).------))))..)))........--....(((((-(((((((...))))))).-......)))))..-- ( -13.81, z-score = -1.22, R) >droYak2.chr2R 13884016 93 - 21139217 UUAACCGAUAUAU---ACU--AUAACUAACUAUAUAACUACUAUAACUCGUAUAUAAG--UCUAGCUAA-UAUGGUCUAGGACCAUGG-CAUUCUUUAGCAA-- ........(((((---((.--............................)))))))..--....(((((-(((((((...))))))).-......)))))..-- ( -13.06, z-score = 0.12, R) >droSec1.super_1 7226267 91 + 14215200 UUAACCGAUAUAU---ACU--AUAACUAACUAUACUAUG--UAUAACUCGUAUAUAAA--UCUAGCUAA-UAUGGUCUAGGACCAUGG-CAUUCUUUAGCAA-- .......((((((---(.(--(((......)))).))))--)))..............--....(((((-(((((((...))))))).-......)))))..-- ( -15.31, z-score = -1.10, R) >droSim1.chrU 10650948 91 + 15797150 UUAACCGAUAUAU---ACU--AUAACUAACUAUACUAUG--UAUAACUCGUAUAUAAA--UCUAGCUAA-UAUGGUCUAGGACCAUGG-CAUUCUUUAGCAA-- .......((((((---(.(--(((......)))).))))--)))..............--....(((((-(((((((...))))))).-......)))))..-- ( -15.31, z-score = -1.10, R) >consensus UUAACCGAUAUAU___AUU__AUAACUAACUAUAC_A____UAUAACUCGUAUAUAAA__UCUAGCUAA_UAUGGUCUAGGACCAUGG_CAUUCUUUAGCAA__ ................................................................(((((.(((((((...)))))))........))))).... (-11.57 = -11.24 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:59 2011