| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,663,767 – 9,663,872 |
| Length | 105 |
| Max. P | 0.991494 |
| Location | 9,663,767 – 9,663,872 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 82.53 |
| Shannon entropy | 0.32658 |
| G+C content | 0.62103 |
| Mean single sequence MFE | -31.73 |
| Consensus MFE | -23.70 |
| Energy contribution | -25.39 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.04 |
| Mean z-score | -2.65 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.48 |
| SVM RNA-class probability | 0.991494 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9663767 105 + 21146708 CACCAUCCCACGGUGGCCACGCAGCUGCAUCAUCAGGUCCUACUUCCAAAGCAGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUU .........(((((((((((...(((((.......((........))...((....)).............)))))....(....)....))))))))))).... ( -32.70, z-score = -2.70, R) >droSim1.chr2R 8104146 105 + 19596830 CACCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUU .........(((((((((((...(((((.......((........))...((....)).............)))))....(....)....))))))))))).... ( -31.70, z-score = -2.24, R) >droSec1.super_1 7191076 105 + 14215200 CACCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCAGCACCACCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUU .........(((((((((((...(((((.......((........))...((....)).............)))))....(....)....))))))))))).... ( -31.70, z-score = -2.24, R) >droYak2.chr2R 13848789 99 - 21139217 CAUCAUCCCACGGUGGCCACGCAGCUGCAUAACCAGGUCCUUCUCCCAAAGCCGCA------CCACCACCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUU .........(((((((((((((....))......((((((..........((.((.------.........)).))........))))))))))))))))).... ( -31.27, z-score = -2.67, R) >droEre2.scaffold_4845 6433919 99 - 22589142 CAUCAUCCCACGGUGGCCACGCAGCAGCAUCACCAGCUCCUGCUCCCAAAGCCGCA------CCACCACCACCAGCAGCACCACGGACUUGUGGCCACUGUCCUU .........(((((((((((((((.(((.......))).))))(((....((.((.------............)).)).....)))...))))))))))).... ( -34.42, z-score = -3.74, R) >droAna3.scaffold_13266 16967629 87 + 19884421 CACCAUCCCACGGUGGCCACGC---UGCAU---------CCACAUCCGCAUCAGCA------CCACCUGCACGAGCCCAGCCACAAUCUGGUGGCCACCGUCCUG .........(((((((((((((---(((..---------........))....(((------.....)))...))).(((.......)))))))))))))).... ( -28.60, z-score = -2.31, R) >consensus CACCAUCCCACGGUGGCCACGCAGCUGCAUCACCAGGUCCUACUCCCAAAGCCGCA______CCACCAUCAGCAGCAACACCACGGACUUGUGGCCACUGUCCUU .........(((((((((((((....))......((((((..........((.((................)).))........))))))))))))))))).... (-23.70 = -25.39 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:55 2011