| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,657,362 – 9,657,481 |
| Length | 119 |
| Max. P | 0.806573 |
| Location | 9,657,362 – 9,657,455 |
|---|---|
| Length | 93 |
| Sequences | 11 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 85.32 |
| Shannon entropy | 0.28471 |
| G+C content | 0.54459 |
| Mean single sequence MFE | -33.48 |
| Consensus MFE | -25.54 |
| Energy contribution | -25.65 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703473 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 9657362 93 + 21146708 -------------------UGAAAACUGCGCGGCCCCGAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUC---- -------------------.(((((((((((.(((.(((((.(.(((.........)))..).)....)))).)))...(((((....)))))((....)))))))))))))---- ( -35.40, z-score = -2.20, R) >droGri2.scaffold_15245 1761941 94 + 18325388 -------------------AGAAAAUUUCGACGCUGCAAGCACACACAAAACUGAAGUGGCGCGAAAAUUUGAGGCACAGUUGCAAGAGCAGCGCGCAAGCGUGCGGUUUUUC--- -------------------.((((((((((.(((..(...((..........))..)..)))))))).......((((.(((((....)))))((....))))))...)))))--- ( -30.80, z-score = -0.94, R) >droMoj3.scaffold_6496 7946117 93 - 26866924 -------------------UGAAAAUUGCAAGCCAGCCAACACACACAAAACUGAAGUGGCGCGAAAAUUCGAGGCACAGUUGCUGCAGCAGCGCGCAAGCGUGCGGUUUUC---- -------------------.((((((((((.(((.((((...((........))...)))).(((....))).)))...(((((....)))))((....)).))))))))))---- ( -33.50, z-score = -1.57, R) >droVir3.scaffold_12875 8312378 93 + 20611582 -------------------UGGAAAUGGCGAGGCUGCAAGCACACACAAAACUGAAGUGGCGCGAAAAUUUGAGGCACAGUUGCAGCAACAGCGCGCAAGCGUGCGGUUUUC---- -------------------.((((((.(((..(((((((.......((....))..(((.(.(((....))).).)))..)))))))..).((((....)))))).))))))---- ( -32.20, z-score = -1.09, R) >droWil1.scaffold_181009 2500536 99 - 3585778 ----------------UGUGGAAAAUUGCGAACCCA-AAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUUCAUC ----------------.(((((((((((((......-...................(((.(.(((....))).).))).(((((....)))))((....)).))))))))))))). ( -31.70, z-score = -1.88, R) >dp4.chr3 5332546 113 - 19779522 CGAAAAACGGCGAGGCGAGCCCCGAGCCCGGAGUCCCAAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUCC--- ........(((..((......))..))).((((..((...(((.............(((.(.(((....))).).))).(((((....)))))((....))))).))..))))--- ( -35.10, z-score = -0.14, R) >droAna3.scaffold_13266 16961415 94 + 19884421 -------------------UGAAAACUGCCAGGCCCCGAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAGCAACAGCGCGCAAGCGUGCGGUUUUCC--- -------------------.(((((((((...(((.(((((.(.(((.........)))..).)....)))).)))...((((...)))).((((....))))))))))))).--- ( -29.50, z-score = -0.86, R) >droEre2.scaffold_4845 6427840 93 - 22589142 -------------------UGAAAACUGCGCGGCCCCGAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUC---- -------------------.(((((((((((.(((.(((((.(.(((.........)))..).)....)))).)))...(((((....)))))((....)))))))))))))---- ( -35.40, z-score = -2.20, R) >droYak2.chr2R 13842517 93 - 21139217 -------------------UGAAAACUGCGCGGCCCCGAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUC---- -------------------.(((((((((((.(((.(((((.(.(((.........)))..).)....)))).)))...(((((....)))))((....)))))))))))))---- ( -35.40, z-score = -2.20, R) >droSec1.super_1 7184838 93 + 14215200 -------------------UGAAAACUGCGCGGCACCGAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUC---- -------------------.(((((((((((.........................(((.(.(((....))).).))).(((((....)))))((....)))))))))))))---- ( -34.40, z-score = -2.10, R) >droSim1.chr2R 8097798 93 + 19596830 -------------------UGAAAACUGCGCGGCACCGAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAGGCGUGCGGUUUUC---- -------------------.((((((((((((.(..........(((.........)))((((((....))........(((((....))))))))).).))))))))))))---- ( -34.90, z-score = -2.13, R) >consensus ___________________UGAAAACUGCGAGGCCCCGAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUC____ ....................(((((((((...........................(((.(.(((....))).).))).(((((....)))))((....))..))))))))).... (-25.54 = -25.65 + 0.11)
| Location | 9,657,380 – 9,657,481 |
|---|---|
| Length | 101 |
| Sequences | 12 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 82.30 |
| Shannon entropy | 0.38585 |
| G+C content | 0.50755 |
| Mean single sequence MFE | -29.83 |
| Consensus MFE | -23.00 |
| Energy contribution | -22.77 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.26 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.806573 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr2R 9657380 101 + 21146708 GAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUCCUCCAC--AGUUUUUC--CAGCCAAAAGUA----- ..........((((((...((((.(.(((((((....((((.(((((....)))))((....)))))))))))))).))))--))))))..--............----- ( -29.70, z-score = -1.91, R) >droGri2.scaffold_15245 1761959 108 + 18325388 AAGCACACACAAAACUGAAGUGGCGCGAAAAUUUGAGGCACAGUUGCAAGAGCAGCGCGCAAGCGUGCGGUUUUUCCUCCAGUUUUGAGCAGGCAGCGCCCGAAAGUA-- .............(((...(.(((((.((((((.(((((((.(((((....)))))((....))))))((....))))).))))))..(....).))))))...))).-- ( -34.30, z-score = -0.15, R) >droMoj3.scaffold_6496 7946135 92 - 26866924 CAACACACACAAAACUGAAGUGGCGCGAAAAUUCGAGGCACAGUUGCUGCAGCAGCGCGCAAGCGUGCGGUUUUCCUCUAG----CGUCUC---AAGUA----------- .............(((...(.(((((...........((((.(((((....)))))((....))))))((....))....)----)))).)---.))).----------- ( -29.00, z-score = -0.35, R) >droVir3.scaffold_12875 8312396 106 + 20611582 AAGCACACACAAAACUGAAGUGGCGCGAAAAUUUGAGGCACAGUUGCAGCAACAGCGCGCAAGCGUGCGGUUUU-CCUCCAAGUUUGAAAAGGCAGCGCC-AAAAGUA-- .............(((....(((((((((((((....((((.((((......))))((....))))))))))))-)......((((....)))).)))))-)..))).-- ( -34.20, z-score = -0.97, R) >droWil1.scaffold_181009 2500556 105 - 3585778 AAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUUCAUCGCCUGCCUUCUCUCCAAAUAAAAAAA----- .....................(((((((.........((((.(((((....)))))((....))))))((....)).))))..)))...................----- ( -26.50, z-score = -0.80, R) >droPer1.super_4 3159565 103 + 7162766 AAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUCCCUCCACAGUUUUCCG--CAGCCGAAAAUA----- ....................(((((((((((((.(((((((.(((((....)))))((....))))))((....)))))...)))))).))--).))))......----- ( -32.90, z-score = -2.47, R) >dp4.chr3 5332583 103 - 19779522 AAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUCCCUCCACAGUUUUCCA--CAGCCGAAAAUA----- ....................((((..(((((((.(((((((.(((((....)))))((....))))))((....)))))...)))))))..--..))))......----- ( -30.40, z-score = -2.27, R) >droAna3.scaffold_13266 16961433 103 + 19884421 GAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAGCAACAGCGCGCAAGCGUGCGGUUUUCCCUCCACCAGCUUUUC--CAGCCAAAAGUA----- ...................((((.(.(((((((....((((.((((......))))((....))))))))))))).).))))..((((((.--.....)))))).----- ( -26.40, z-score = -0.50, R) >droEre2.scaffold_4845 6427858 106 - 22589142 GAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUCCUCCAC--AGUUUUUC--CAGCCAAAACAAAAGUA ..........((((((...((((.(.(((((((....((((.(((((....)))))((....)))))))))))))).))))--))))))..--................. ( -29.70, z-score = -1.83, R) >droYak2.chr2R 13842535 101 - 21139217 GAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUCCUCCAC--AGUUUUUC--CAGCCAAAAGUA----- ..........((((((...((((.(.(((((((....((((.(((((....)))))((....)))))))))))))).))))--))))))..--............----- ( -29.70, z-score = -1.91, R) >droSec1.super_1 7184856 101 + 14215200 GAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUCCUCCAA--AGUUUUUC--CAGCCAAAAGUA----- .............(((....((((..(((((((....((((.(((((....)))))((....))))))((.......))..--))))))).--..))))..))).----- ( -28.80, z-score = -1.53, R) >droSim1.chr2R 8097816 101 + 19596830 GAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAGGCGUGCGGUUUUCCUCCAC--AGUUUUUC--CAGCCAAAAGUA----- .............(((....((((..(((((((.((((.((.(((((....)))))((((....)))).))...))))...--))))))).--..))))..))).----- ( -26.30, z-score = -0.42, R) >consensus GAACACACACAAAACUCAAGUGGCGCGAAAAUUCGAGGCACAGUUGCAACAGCAGCGCGCAAGCGUGCGGUUUUCCUCCAA__AGUUUUUC__CAGCCAAAAAUA_____ ((((.(.(((.........(((.(.(((....))).).))).(((((....)))))((....))))).)))))..................................... (-23.00 = -22.77 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:54 2011