| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,778,705 – 2,778,770 |
| Length | 65 |
| Max. P | 0.891603 |
| Location | 2,778,705 – 2,778,770 |
|---|---|
| Length | 65 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 53.52 |
| Shannon entropy | 0.62829 |
| G+C content | 0.40554 |
| Mean single sequence MFE | -13.76 |
| Consensus MFE | -8.49 |
| Energy contribution | -6.62 |
| Covariance contribution | -1.87 |
| Combinations/Pair | 1.77 |
| Mean z-score | -0.73 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.10 |
| SVM RNA-class probability | 0.891603 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2778705 65 + 23011544 CCACACUAUAUCCAUCAAUCCCAGCCCAAGUAUAGGCUUCUCU---------UUAAGGGAAGGGGAGUGACGUA ..............(((.((((.(((........)))(((((.---------....))))).)))).))).... ( -16.10, z-score = -0.61, R) >droSim1.chr3h_random 118352 65 + 1452968 CAAGAUUAUAUGCGUCAAGCCCAUUACAAGCAUAAGCUUCCUU---------UUAAGGGGAGGGAAGUAGCAAA ........(((((................))))).((((((((---------((....))))))))))...... ( -14.89, z-score = -1.37, R) >droAna3.scaffold_12948 208939 74 + 692136 CAACAUUUUGUUUAACAAUAAAAAAAAAAAAACAUACUCUCCUAGAGUUCCAUUUUGCCGGGAGGAGUGACAUA .....(((((((....)))))))...........(((((((((.(.((........))))))).)))))..... ( -10.30, z-score = -0.22, R) >consensus CAACAUUAUAUCCAUCAAUCCCAAAACAAGAAUAAGCUUCCCU_________UUAAGGGGAGGGGAGUGACAUA ........(((((................))))).((((((((.................))))))))...... ( -8.49 = -6.62 + -1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:14 2011