| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,648,292 – 9,648,393 |
| Length | 101 |
| Max. P | 0.608986 |
| Location | 9,648,292 – 9,648,393 |
|---|---|
| Length | 101 |
| Sequences | 9 |
| Columns | 116 |
| Reading direction | reverse |
| Mean pairwise identity | 70.41 |
| Shannon entropy | 0.63647 |
| G+C content | 0.49368 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -11.03 |
| Energy contribution | -11.17 |
| Covariance contribution | 0.14 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.07 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.24 |
| SVM RNA-class probability | 0.608986 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9648292 101 - 21146708 -------------CACCACCACCCUCGCUCCAGAAUUUUUUUUUUUAUGGAAGCCAAGAGGUGGCGGCCUAUUUCACACUUUUAUAGAAAA--UUUUUGCCAAUUGUCUGGCGACG -------------..((.(((((((.(((((((((........))).))).)))..)).))))).)).((((...........))))....--...((((((......)))))).. ( -25.00, z-score = -2.05, R) >droSim1.chr2R 8088898 109 - 19596830 ---CACCACCUACUCCCGCCACACCCGCUCCACAA--AUUUUUUUUAUGUUGGCCAAGGGGUGGCGGCCUAUUUCACACUUUUAUAGAAAA--UUUUUGCCAAUUGUCUGGCGACG ---............(((((((.(((...(((((.--..........)).)))....)))))))))).((((...........))))....--...((((((......)))))).. ( -28.40, z-score = -1.97, R) >droSec1.super_1 7175980 111 - 14215200 ---CACCACCUACUCCCGCCACACCCGCUCUACAAUUUUUUUUUUUAUGUUGGCCAAGGGGUGGCGGCCUAUUUCACACUUUUAUAGAAAA--UUUUUGCCAAUUGUCUGGCGACG ---............(((((((.(((......((((............)))).....)))))))))).((((...........))))....--...((((((......)))))).. ( -28.00, z-score = -2.04, R) >droYak2.chr2R 13833382 112 + 21139217 CACCACCCGCUACCCCCACUACCACGGCUCCAAAA--AUUUUUUGUAUGGGGGCCAAGGGGCGGCGGCCUAUUUCACACUUUUAUAGAAAA--UUUUUGCCAAUUGUCUGGCGACG ......((((..((((.........((((((...(--(....)).....))))))..))))..)))).((((...........))))....--...((((((......)))))).. ( -30.80, z-score = -0.50, R) >droEre2.scaffold_4845 6418984 108 + 22589142 ------CACCACCCCCUAGCCCCCCUGGCCCGUCCACAAAUUUUUUAUGGGGGCCAAGGGGCGGCGGCCUAUUUCACACUUUUAUAGAAAA--UUUUUGCCAAUUGUCUGGCGACG ------............(((((((((((((..(((.((.....)).)))))))).))))).)))...((((...........))))....--...((((((......)))))).. ( -35.10, z-score = -1.05, R) >droAna3.scaffold_13266 16952782 98 - 19884421 ------UGGCGCCUCCCGCUUCCCUU-CCCCAAAA-------CUUUACG--GGCCAAGGGGUGACGGCCUAUUUCACACUUUUAUAGAAAA--UUUUUGCCAAUUGUCUGGCGACG ------(((.(((...(((..(((((-.(((....-------......)--))..))))))))..))))))....................--...((((((......)))))).. ( -22.90, z-score = 0.36, R) >dp4.chr3 5322864 113 + 19779522 --CACCGCCCAUUCCCCAUUCCCCUCGCCACUCUCCACCUUCUUCCACCCUGGCCAAGGGGUGACGGCCUAUUUCACACUUUUAUAGAAAA-UUUUUUGCCAAUUGUCUGGCGACG --......................((((((..(............((((((......))))))..(((..........((.....))....-......)))....)..)))))).. ( -22.05, z-score = -0.61, R) >droPer1.super_4 3149912 114 - 7162766 --CACCGCCCGUUCCCCAUUCCCCUCGCCACUCUCCACCUUCUUCCACCCUGGCCAAGGGGUGACGGCCUAUUUCACACUUUUAUAGAAAAUUUUUUUGCCAAUUGUCUGGCGACG --....(.(((((.......(((((.((((....................))))..))))).))))).)...........................((((((......)))))).. ( -22.55, z-score = -0.58, R) >droWil1.scaffold_181009 2487467 78 + 3585778 ------------------------------------UACAGCGUAUCCGGACAUUGGAGGAGGACGGCCUAUUUCACACUUUUAUAGAAAA--UUUUUGCCAAUUGUCUGGCGACG ------------------------------------.....(((..(((((((((((...(((....))).((((...........)))).--......)))).)))))))..))) ( -18.10, z-score = -1.18, R) >consensus _____CCACCUACCCCCACCACCCCCGCCCCACAA__AUUUUUUUUAUGGUGGCCAAGGGGUGGCGGCCUAUUUCACACUUUUAUAGAAAA__UUUUUGCCAAUUGUCUGGCGACG ...................................................((((..........))))...........................((((((......)))))).. (-11.03 = -11.17 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:52 2011