| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,639,091 – 9,639,141 |
| Length | 50 |
| Max. P | 0.908678 |
| Location | 9,639,091 – 9,639,141 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 94.60 |
| Shannon entropy | 0.09961 |
| G+C content | 0.29600 |
| Mean single sequence MFE | -5.08 |
| Consensus MFE | -4.82 |
| Energy contribution | -4.50 |
| Covariance contribution | -0.32 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.69 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.908678 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9639091 50 + 21146708 GAAUUUUAUAAAAUUGAUACCUUUUAGCCAACGAUUAACCAAUCGUUCAU .............................(((((((....)))))))... ( -4.50, z-score = -1.65, R) >droEre2.scaffold_4845 6408334 50 - 22589142 GAAUUUUAUAAAAAUAAUACCUUUUAGCCAGCGAUUAACCAGUCGUUCAU .............................(((((((....)))))))... ( -4.50, z-score = -1.42, R) >droYak2.chr2R 13824074 50 - 21139217 GAACUUUGUAAAAGUGAUACCUUUUAGCCAACGAUUAACCAAUCGUUCAU ((((....((((((......))))))......((((....)))))))).. ( -7.40, z-score = -2.10, R) >droSec1.super_1 7166728 50 + 14215200 GAAUUUUAUAAAAUUGAUACCUUUUAGCCAACGAUUAACCAAUCGUUCAU .............................(((((((....)))))))... ( -4.50, z-score = -1.65, R) >droSim1.chr2R 8079124 50 + 19596830 GAAUUUUAUAAAAUUGAUACCUUUUAGCCAACGAUUAACCAAUCGUUCAU .............................(((((((....)))))))... ( -4.50, z-score = -1.65, R) >consensus GAAUUUUAUAAAAUUGAUACCUUUUAGCCAACGAUUAACCAAUCGUUCAU .............................(((((((....)))))))... ( -4.82 = -4.50 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:49 2011