| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,637,127 – 9,637,219 |
| Length | 92 |
| Max. P | 0.938137 |
| Location | 9,637,127 – 9,637,219 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | forward |
| Mean pairwise identity | 79.69 |
| Shannon entropy | 0.35591 |
| G+C content | 0.31573 |
| Mean single sequence MFE | -20.34 |
| Consensus MFE | -12.47 |
| Energy contribution | -14.04 |
| Covariance contribution | 1.57 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.30 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.44 |
| SVM RNA-class probability | 0.938137 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9637127 92 + 21146708 AGUAUAAUUUGCUUAAUUGUAAGCUCUUAAACAGAAAAGGAAGUCACUUAAUGAUUUUCUUUUUGCGGAAAAUGCCUACUUAUGGCAUACCA .((.(((...(((((....)))))..))).)).(((((((((((((.....)))))))))))))..((...(((((.......))))).)). ( -23.90, z-score = -3.19, R) >droEre2.scaffold_4845 6406454 71 - 22589142 UGUAUAAUUUGUUUAAUUGUUAGCUCUUAAAAAGAGUAGGAAGU---------GUUUUCUUUUCGCGGAAAAUAACUACU------------ .((((((((.....))))))..))..........(((((....(---------(((((((......)))))))).)))))------------ ( -10.50, z-score = -0.18, R) >droYak2.chr2R 13822056 88 - 21139217 UGUAUAAUUUGCUUAAUUGUUAGCUUAUAAGAGGAGUAGGAAGUCUUUUAAUGAUUUUCUCUUUCCGGAAAAUACCCCCUUAUGGCAU---- ...((((((.....))))))..(((.(((((.((((.((((((((.......))))))))..))))((........))))))))))..---- ( -19.10, z-score = -1.17, R) >droSec1.super_1 7164815 92 + 14215200 AGUAUAAUUUGCUUAAUUGUAAGCUCUUAAACCGAAAAGGAAGUCUCUUAAUGAUUUUCUUUUUGCGGAAAAUGCCUACUUAUGGCAUACCA .((.(((...(((((....)))))..))).))(((((((((((((.......))))))))))))).((...(((((.......))))).)). ( -24.10, z-score = -3.48, R) >droSim1.chr2R 8077204 92 + 19596830 AGUAUAAUUUGCUUAAUUGUAAGCUCUUAAACCGAAAAGGAAGUCUCUUAAUGAUUUUCUUUUUGCGGAAAAUGCCUACUUAUGGCAUACCA .((.(((...(((((....)))))..))).))(((((((((((((.......))))))))))))).((...(((((.......))))).)). ( -24.10, z-score = -3.48, R) >consensus AGUAUAAUUUGCUUAAUUGUAAGCUCUUAAACAGAAAAGGAAGUCUCUUAAUGAUUUUCUUUUUGCGGAAAAUGCCUACUUAUGGCAUACCA ..........(((((....)))))........(((((((((((((.......)))))))))))))......(((((.......))))).... (-12.47 = -14.04 + 1.57)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:48 2011