| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,612,523 – 9,612,589 |
| Length | 66 |
| Max. P | 0.993936 |
| Location | 9,612,523 – 9,612,589 |
|---|---|
| Length | 66 |
| Sequences | 3 |
| Columns | 66 |
| Reading direction | forward |
| Mean pairwise identity | 66.15 |
| Shannon entropy | 0.48430 |
| G+C content | 0.54353 |
| Mean single sequence MFE | -13.58 |
| Consensus MFE | -7.10 |
| Energy contribution | -7.10 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.66 |
| SVM RNA-class probability | 0.993936 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9612523 66 + 21146708 AUGGCCCACUACCCCAACUACCCCAGUCCGCCACAAUCCUCCGCCCGCCGGAAACGAGCAUAAAAU .((((..(((..............)))..)))).............((((....)).))....... ( -11.74, z-score = -1.98, R) >droSim1.chr2R 8060014 63 + 19596830 ---GUUUCCCCCUCCACAAAAGGAGGGGUACCACAAUCCUCCACCCGCCGGAAACGAGCAUAAAAU ---.....(((((((......)))))))..................((((....)).))....... ( -21.80, z-score = -4.02, R) >droYak2.chr2R 13804799 56 - 21139217 -------UUUGCCCCAAC-ACCCCAA--CAUCAAAAUGCUCCACCCGCCGGAAACGAGCAUAAAAU -------...........-.......--.......((((((..((....))....))))))..... ( -7.20, z-score = -1.99, R) >consensus ___G___ACUACCCCAAC_ACCCCAG__CACCACAAUCCUCCACCCGCCGGAAACGAGCAUAAAAU ..............................................((((....)).))....... ( -7.10 = -7.10 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:46 2011