| Sequence ID | dm3.chr2L |
|---|---|
| Location | 327,305 – 327,413 |
| Length | 108 |
| Max. P | 0.522130 |
| Location | 327,305 – 327,413 |
|---|---|
| Length | 108 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.00 |
| Shannon entropy | 0.30709 |
| G+C content | 0.47190 |
| Mean single sequence MFE | -31.35 |
| Consensus MFE | -23.33 |
| Energy contribution | -23.97 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.522130 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 327305 108 - 23011544 GUCAAUUCAUUAAUGCACACAGCGAAGGCGGGGUCUCUGCUCUUAAAUGUAUGCUAUGCUUUUCGUGGCUUUCUGUUAAUCACACAUGGGCCUGCGAGUGUGUGUUUG------------ ...........(((((((((.((....)).((((((.((...((((......((((((.....))))))......)))).....)).))))))....)))))))))..------------ ( -28.20, z-score = -0.28, R) >droSim1.chr2L 347100 97 - 22036055 CUCAAUUCAUUAAGACACACAGCGAGGGCGGGUUCUCUGCUCUUGAAUGUAUGCUAU----------GCUUUCUGUUAAUCACACAUGGGCCUGCGAGUGUGUGUUG------------- .............((((((((.(((((((((.....)))))))))......(((...----------((((..(((.....)))...))))..)))..)))))))).------------- ( -28.40, z-score = -1.05, R) >droSec1.super_14 324824 98 - 2068291 CUCAAUUCAUUAAGGCACACAGCGAGGGCGGGUUCUCUGCUCUUAAAUGUAUGCUAU----------GCUUUCUGUUAAUCACACAUGGGCCUGCGAGUGUGUGUUUG------------ .............((((.(((..((((((((.....))))))))...))).))))..----------.............(((((((..(....)..)))))))....------------ ( -26.50, z-score = -0.60, R) >droYak2.chr2L 323523 119 - 22324452 CUCAAUUCAUUAACGCACACAGCGAGGGCGGGUCUCUUGCUUUUAAAUGUAUGCUAUGCUUUU-CUGGCUUUUACUUAAUCACACAUGGGCCUGCCUGCGUGUGUGUGUGUGUGUGUUUG ..(((..(((..((((((((((((.((((((((((..((.........(((.((((.......-.))))...))).........)).)))))))))).))).)))))))))..))).))) ( -40.57, z-score = -3.05, R) >droEre2.scaffold_4929 382601 108 - 26641161 CUCAAUUCAUUAACGCACACAGCGAGCGCGGGUCUCCUGCUCUUAAAUGUAUGCUAUGCUUUUCCUGGCUUUCAGUUAAUCUCACAUGGGCCUGCGAGUGUGUGUGUG------------ .............((((((((.((..(((((((((..((...((((.((...((((.........))))...)).))))...))...)))))))))..))))))))))------------ ( -33.10, z-score = -1.71, R) >consensus CUCAAUUCAUUAACGCACACAGCGAGGGCGGGUUCUCUGCUCUUAAAUGUAUGCUAUGCUUUU__UGGCUUUCUGUUAAUCACACAUGGGCCUGCGAGUGUGUGUUUG____________ ............((((((((.(((((((((((...)))))))))....(((.(((..........((((.....))))..........))).)))..))))))))))............. (-23.33 = -23.97 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:05:31 2011