| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,556,225 – 9,556,322 |
| Length | 97 |
| Max. P | 0.795445 |
| Location | 9,556,225 – 9,556,322 |
|---|---|
| Length | 97 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 82.68 |
| Shannon entropy | 0.30683 |
| G+C content | 0.37113 |
| Mean single sequence MFE | -23.47 |
| Consensus MFE | -18.83 |
| Energy contribution | -17.99 |
| Covariance contribution | -0.84 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.47 |
| Structure conservation index | 0.80 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.71 |
| SVM RNA-class probability | 0.795445 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9556225 97 - 21146708 UACUUCCAUUGAGUGAGGAAGUAUUGGUUUGUUAUGUGAAGAUAUUUCUUUGUCGUUUGCUCUUCCAACACUUUUGGAUUUAGUUUUUAACGGGAAA ...((((.....(..((((((((((..((........)).))))))))))..)((((.(((..(((((.....)))))...)))....)))))))). ( -21.30, z-score = -1.05, R) >droEre2.scaffold_4845 6336507 97 + 22589142 UACUUCCAGUGAAUGUGGUUGUGUUGAUUUGUCCUGUGAGGAUAUUCCCUUGCCUUUCGGCCUUCCAGCACUUCUGGAUUUAGUUUUUAGCGGAAAA ...((((..(((((.(((..((((((...(((((.....))))).......(((....)))....))))))..))).)))))((.....)))))).. ( -24.30, z-score = -1.03, R) >droYak2.chr2R 13747617 97 + 21139217 UACUUCCCAUGAAUGUGGGAGUAUUGAUUUAUCCUGUGAAGAUAUUUCUUUGCCUUCUGCCCUUUCAGCACUUUUGGAUUUUGUUUUCAGCGGAACA ((((.(((((....)))))))))........(((..((((((((..(((.......(((......))).......)))...))))))))..)))... ( -22.14, z-score = -1.10, R) >droSec1.super_1 7083009 97 - 14215200 UACUUCCAGUGAGUGGGGAAGUAUUGGUUUGUUAUGUGAAGAUAUUUCUUUGUCUUUUGCUCUUCCAGUACUUUUGGGCUUAGUUUUAAACGGAAAA ...((((..(((((..(((((((((((...((.....(((((((......))))))).))....)))))))))))..)))))((.....)))))).. ( -26.80, z-score = -2.50, R) >droSim1.chr2R 8002285 97 - 19596830 UACUUCCAAUGAGUGGGGAAGUAUUGGUUUGUUAUGUGAAGAUAUAUAUUUGUCAUUUGCUCUUCCAGUACUUUUGGAUUUAGUUUUAAACGGGAAA ...((((..(((((..(((((((((((...(....(..((((((......)))).))..).)..)))))))))))..)))))((.....)).)))). ( -22.80, z-score = -1.65, R) >consensus UACUUCCAAUGAGUGGGGAAGUAUUGGUUUGUUAUGUGAAGAUAUUUCUUUGUCUUUUGCUCUUCCAGCACUUUUGGAUUUAGUUUUAAACGGAAAA ...((((..(((((..(((((((((((........(..((((....))))..)...........)))))))))))..)))))((.....)))))).. (-18.83 = -17.99 + -0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:42 2011