| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,542,147 – 9,542,239 |
| Length | 92 |
| Max. P | 0.827778 |
| Location | 9,542,147 – 9,542,239 |
|---|---|
| Length | 92 |
| Sequences | 10 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 85.20 |
| Shannon entropy | 0.27784 |
| G+C content | 0.47184 |
| Mean single sequence MFE | -27.71 |
| Consensus MFE | -25.90 |
| Energy contribution | -25.65 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827778 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9542147 92 - 21146708 -------------UGGAGCUGGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCGGCAUACAAAGUGG--------------- -------------....(((.((((((((((((((.....))))(((.(((......)))......((((((......)))))).)))))))))))))..)))..--------------- ( -26.70, z-score = -1.15, R) >droSim1.chr2R 7988331 92 - 19596830 -------------UGGAGCUGGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCGGCAUACAAAGUGG--------------- -------------....(((.((((((((((((((.....))))(((.(((......)))......((((((......)))))).)))))))))))))..)))..--------------- ( -26.70, z-score = -1.15, R) >droSec1.super_1 7069039 92 - 14215200 -------------UGGAGCUGGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCGGCAUACAAAGUGG--------------- -------------....(((.((((((((((((((.....))))(((.(((......)))......((((((......)))))).)))))))))))))..)))..--------------- ( -26.70, z-score = -1.15, R) >droYak2.chr2R 13733306 92 + 21139217 -------------CGGAGCUGGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCGGCAUACAAAGUGG--------------- -------------....(((.((((((((((((((.....))))(((.(((......)))......((((((......)))))).)))))))))))))..)))..--------------- ( -26.70, z-score = -1.06, R) >droEre2.scaffold_4845 6322607 92 + 22589142 -------------CGAAGCUGGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCGGCAUACAAAGUGG--------------- -------------....(((.((((((((((((((.....))))(((.(((......)))......((((((......)))))).)))))))))))))..)))..--------------- ( -26.70, z-score = -1.43, R) >droAna3.scaffold_13266 16848269 90 - 19884421 ---------------AGGAUUGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCGGCAUACAAAGUGG--------------- ---------------....((((((((((((((((.....))))(((.(((......)))......((((((......)))))).))))))))))))))).....--------------- ( -27.70, z-score = -2.16, R) >droWil1.scaffold_181009 2350342 107 + 3585778 -------------GAGAGUGUGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCGGCAUACAAAGUGGGACUAUUCGUUGCUU -------------.......(((((((((((((((.....))))(((.(((......)))......((((((......)))))).))))))))))))))(((..(((....)).)..))) ( -28.70, z-score = -0.56, R) >droVir3.scaffold_12875 8142650 102 - 20611582 ---UGGAUUCGGAGGCGUUGUGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCAGCAUACAAAAUGG--------------- ---............((((.(((((((((((((((.....))))(((.(((......)))......((((((......)))))).)))))))))))))).)))).--------------- ( -30.40, z-score = -1.45, R) >droMoj3.scaffold_6496 7760132 105 + 26866924 GUGGGGAUUUGAAGGCGUUGUGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCGGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCUGGCAUACAAAAUGG--------------- .......((((...(((((((.(((((....))))).)))))))....((((((...(((......((((((......)))))))))..))))))..))))....--------------- ( -28.50, z-score = -0.47, R) >droGri2.scaffold_15245 1622450 101 - 18325388 ----UGGAGAGGGGCCGCAAUGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCAGCAUACAAAGUAC--------------- ----.((.......))((..(((((((((((((((.....))))(((.(((......)))......((((((......)))))).))))))))))))))..))..--------------- ( -28.30, z-score = -0.63, R) >consensus _____________GGGAGCUGGUGUGCUGGCGCAUAAAUAAUGUGACCUGCCUGACUGCGAUUAUCUGUGAACUAUUUUUCACACGUUGCCGGCAUACAAAGUGG_______________ .....................((((((((((((((.....))))(((.(((......)))......((((((......)))))).)))))))))))))...................... (-25.90 = -25.65 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:37 2011