| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,535,666 – 9,535,729 |
| Length | 63 |
| Max. P | 0.614567 |
| Location | 9,535,666 – 9,535,729 |
|---|---|
| Length | 63 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 83.37 |
| Shannon entropy | 0.31457 |
| G+C content | 0.38396 |
| Mean single sequence MFE | -8.85 |
| Consensus MFE | -8.05 |
| Energy contribution | -7.72 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.42 |
| Mean z-score | -0.77 |
| Structure conservation index | 0.91 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.25 |
| SVM RNA-class probability | 0.614567 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9535666 63 - 21146708 -GAAAGUGGUGGAAAACCAAAUGUAAUGAAUCGAUGAGCGCCGAAGCCAAUUGUCGAAAAUAAA -.....((((.....))))...........((((..(..((....))...)..))))....... ( -11.10, z-score = -1.36, R) >droAna3.scaffold_13266 16841717 57 - 19884421 -------AAUCGAAAACGGAAUAUAAUGAAUCGAUGAGUUCGAAAGCCAAUCACUCAGAGUAAA -------.(((((...((........))..)))))((((.(....)......))))........ ( -5.10, z-score = 0.82, R) >droEre2.scaffold_4845 6312088 57 + 22589142 -------AGUGGAAAACCAAAUGUAAUGAAUCGAUGAGCGCCGAGGCCAAUUGUCGAAAAUAAA -------..(((....)))...........((((..(..((....))...)..))))....... ( -10.50, z-score = -1.17, R) >droYak2.chr2R 13726635 64 + 21139217 GAAAACCAGUGGAAAACCAAAUGUAAUGAAUCGAUGAGCGCCGUAGCCAAUUGUCGAAAAUAAA ....((...(((....)))...))......((((..(..((....))...)..))))....... ( -9.20, z-score = -1.04, R) >droSec1.super_1 7053390 63 - 14215200 -GAAAGUAGUGGAAAACCAAAUGUAAUGAAUCGAUGAGCGCCGAAGCCAAUUGUCGAAAAUAAA -........(((....)))...........((((..(..((....))...)..))))....... ( -8.60, z-score = -0.94, R) >droSim1.chr2R 7981073 63 - 19596830 -GAAAGUAGUGGAAAACCAAAUGUAAUGAAUCGAUGAGCGCCGAAGCCAAUUGUCGAAAAUAAA -........(((....)))...........((((..(..((....))...)..))))....... ( -8.60, z-score = -0.94, R) >consensus _GAAAGUAGUGGAAAACCAAAUGUAAUGAAUCGAUGAGCGCCGAAGCCAAUUGUCGAAAAUAAA .........(((....)))...........(((((((..((....))...)))))))....... ( -8.05 = -7.72 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:35 2011