| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,523,054 – 9,523,159 |
| Length | 105 |
| Max. P | 0.910305 |
| Location | 9,523,054 – 9,523,159 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 77.78 |
| Shannon entropy | 0.42150 |
| G+C content | 0.53251 |
| Mean single sequence MFE | -24.23 |
| Consensus MFE | -14.87 |
| Energy contribution | -15.57 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.84 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.21 |
| SVM RNA-class probability | 0.910305 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9523054 105 - 21146708 AGGAAGCGAAAAG-GAAAAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCUGCCACGCCUCCCCACACCACUCCCCAACCGAGCG .(((.((.....(-((.....)))..((((((.(....)))))))..((((((.....((....)).....)))))))).)))........(((.......))).. ( -26.60, z-score = -2.17, R) >droEre2.scaffold_4845 6299762 88 + 22589142 AGGAAGCG-AAAG-GAAAAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCCGCCACACACCGCC-CACCA--------------- .((..(((-...(-((.....)))..((((((.(....))))))).((((((......((....))......))))))...))).-..)).--------------- ( -24.40, z-score = -2.23, R) >droYak2.chr2R 13713931 104 + 21139217 AGGAAGCGAAAAGGAAAAAAAUCCCCCCAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCAGCCACUCCUU-CCAUACUCCUCCCCACCCACCA- .(((((.((...(((......))).....(((.(((((((((.....)))))).....((....)).....)))))))))))-))....................- ( -24.40, z-score = -2.02, R) >droSec1.super_1 7040075 102 - 14215200 AGGAAGCGAAAAG-GAAAAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCUGCCACGACUC-CC-CACCCCUGCCCGUCCAGCA- .((..(((...((-(...........((((((.(....))))))).(((((((.....((....)).....)))))))....-..-....)))...)))))....- ( -26.50, z-score = -1.74, R) >droSim1.chr2R 7965571 103 - 19596830 AGGAAGCGAAAAGAAAAAAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCUGCCACGACUC-CC-CACCCCUGCCCGUCCAGCA- .(((.(((..................((((((.(....))))))).(((((((.....((....)).....)))))))....-..-......)))...)))....- ( -25.00, z-score = -2.19, R) >dp4.chr3 5219937 79 + 19779522 AGGCAGAAAAUAG-AAAAAAUUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAGCGAAACCCGAGGCUGCUCCUCC-------------------------- .(((((......(-((....))).......(((...((((((.....))))))....)))..........))))).....-------------------------- ( -18.50, z-score = -0.69, R) >consensus AGGAAGCGAAAAG_AAAAAAAUCCCCCAAGUGCGUUUGCCACUUGAUGUGGCAUCUAAGGAAACCCGAAUCUGCCACGCCUC_CC_CACCCCU_CCC__CCA_CA_ ..........................((((((.(....)))))))..((((((.....((....)).....))))))............................. (-14.87 = -15.57 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:34 2011