| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,496,025 – 9,496,138 |
| Length | 113 |
| Max. P | 0.869183 |
| Location | 9,496,025 – 9,496,138 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 73.39 |
| Shannon entropy | 0.47266 |
| G+C content | 0.43088 |
| Mean single sequence MFE | -28.06 |
| Consensus MFE | -13.32 |
| Energy contribution | -15.56 |
| Covariance contribution | 2.24 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869183 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9496025 113 - 21146708 CAAAUUAUGAGCCAAAUAAUAUCUCCAGCCCAUAGAGAACAAUUUCUGUUCUCGAAAUAUGCUUGACCCACUAUUUUCGCUCAGUGUACGAGCUCCUCCGCUCGGUGACAUGC .......(((((.(((((.....((.(((.....(((((((.....))))))).......))).)).....)))))..)))))((((.(((((......)))))...)))).. ( -30.70, z-score = -3.76, R) >droSim1.chr2R 7940782 113 - 19596830 AAAAUUAUGAGCCAAAUAAUAUCUCCAGCCAAUAGAGAACAAUUCUUGUUCUCGAAAUAUGCUUGACCUACUAUUUUCGCUCAGUGUACGAGCUCCUCCGCUCGGUGACAUGC .......(((((.(((((.((..((.(((.....(((((((.....))))))).......))).))..)).)))))..)))))((((.(((((......)))))...)))).. ( -31.80, z-score = -4.16, R) >droSec1.super_1 7013872 107 - 14215200 ------AUGAGCCAAAUAAUAUCUGCAGCCAAUGGAGAACAAUUUCUGUUCUCGAAAUAUGCUUGUCCUACUAUUUUCGCUCAGUGUACGAGCUCCUCCGCUCGGUGACAUGC ------.(((((.(((((.((...(((((...(.(((((((.....))))))).).....)).)))..)).)))))..)))))((((.(((((......)))))...)))).. ( -29.60, z-score = -2.43, R) >droYak2.chr2R 13686978 107 + 21139217 ----UAAUUGGCUAGGUUCAAGAU--AAUUGUUGAAGAAAUAUUUCUGUGUUCUAAAUGAGUUUGGCAUGCUAUUUUCGCUCAGUGCACGAGCUUCUCCGCUUGGUGACAUGC ----.....((..((((((.(((.--...((((.....))))..)))((((.((.(.((((..(((....)))..)))).).)).))))))))))..))((.((....)).)) ( -24.40, z-score = 0.08, R) >droEre2.scaffold_4845 6270553 101 + 22589142 ----UAAUUCGAUGG---UAAAAU--AUCUAGCCAAG---UAUGACUGUUGUCGAAAUGAGUUUGGCAUGCCAUUUUCGCUCAGUGUAUGAGCUGCUCCGCUCGCUGACAUGC ----...((((((..---((..((--((........)---)))...))..)))))).(((((.(((....))).....)))))((((.(((((......)))))...)))).. ( -23.80, z-score = 0.17, R) >consensus ____UAAUGAGCCAAAUAAUAUCU_CAGCCAAUAGAGAACAAUUUCUGUUCUCGAAAUAUGCUUGACCUACUAUUUUCGCUCAGUGUACGAGCUCCUCCGCUCGGUGACAUGC .......(((((......................(((((((.....)))))))((((((............)))))).)))))((((.(((((......)))))...)))).. (-13.32 = -15.56 + 2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:32 2011