| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,739,978 – 2,740,048 |
| Length | 70 |
| Max. P | 0.831433 |
| Location | 2,739,978 – 2,740,048 |
|---|---|
| Length | 70 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 70.26 |
| Shannon entropy | 0.57650 |
| G+C content | 0.43107 |
| Mean single sequence MFE | -15.15 |
| Consensus MFE | -7.18 |
| Energy contribution | -8.40 |
| Covariance contribution | 1.22 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.43 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.84 |
| SVM RNA-class probability | 0.831433 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2739978 70 - 23011544 UGAAAUUAACAUACCCUUACAGUGCUGCCAGAUGACGAAAAGCAAGGGCAACGCAAAUAAGAGCAGCACU ....................(((((((((...((.(.....)))..(....)........).)))))))) ( -13.90, z-score = -1.22, R) >droEre2.scaffold_4929 2792524 69 - 26641161 UGCAAUUAACAUACUCUUGCAGUGCUGCCAGAUGAC-CAAAGCGCUUGCAACGGAAAUAUGAGCAGCACA (((((...........)))))(((((((((.((..(-(...((....))...))..)).)).))))))). ( -19.80, z-score = -1.60, R) >droYak2.chr2L 2735112 69 - 22324452 UGAAGUUAACAUACUGCUACAGUGCUGCCAGACGAC-CUAAGCUCUUGCAACGGAAAUAUGAGCAGCGCC ((.(((.........))).))(((((((((.....(-(...((....))...)).....)).))))))). ( -16.80, z-score = -0.88, R) >droSec1.super_5 906010 70 - 5866729 UGAAAUUAACAUACCCUUACAGUGCUGCCAGAUGACGAAAAGCAAGGGCAACGCAAGUAAGAGCAGCACU ....................(((((((((............((....)).((....))..).)))))))) ( -17.40, z-score = -2.15, R) >droSim1.chr2L 2702190 70 - 22036055 UGAAAUUAACAUACCCUUACAGUGCUGCCAGAUGACGAAAAGCAAGGGCAACGCAAGUAAGAGCAGCACU ....................(((((((((............((....)).((....))..).)))))))) ( -17.40, z-score = -2.15, R) >apiMel3.GroupUn 395172197 66 + 399230636 --UAAAAAGGAAGCCCGUUCAAACUUA--AAGCGAUUAAUCAAAAAAGAAUUGUACAUAAGUAAAUUACU --......((....))......(((((--..((((((...........))))))...)))))........ ( -5.60, z-score = -0.59, R) >consensus UGAAAUUAACAUACCCUUACAGUGCUGCCAGAUGACGAAAAGCAAGGGCAACGCAAAUAAGAGCAGCACU .....................(((((((.............((....)).............))))))). ( -7.18 = -8.40 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:12 2011