| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,483,295 – 9,483,391 |
| Length | 96 |
| Max. P | 0.518105 |
| Location | 9,483,295 – 9,483,391 |
|---|---|
| Length | 96 |
| Sequences | 12 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 70.57 |
| Shannon entropy | 0.62146 |
| G+C content | 0.49345 |
| Mean single sequence MFE | -29.04 |
| Consensus MFE | -13.78 |
| Energy contribution | -11.98 |
| Covariance contribution | -1.80 |
| Combinations/Pair | 1.58 |
| Mean z-score | -0.84 |
| Structure conservation index | 0.47 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.518105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9483295 96 + 21146708 UUUGCUGAGUUGGAAACGAAGUUGGGCGAAGUGGAUCGAGCUAGAGCCAUCUAUGCUCAUUGCUCACAGGUAUGAUAAUAUAUAUAGAUUUCUAAU------------ ((((((.(.(((....)))...).))))))..(((((((((..((((.......))))...))))....((((....)))).....))))).....------------ ( -23.00, z-score = -0.54, R) >droSim1.chr2R 7927335 92 + 19596830 UUCGCAGAGUUGGAAACGAAGUUGGGCGAAGUCGAUCGAGCUAGGGCCAUCUAUGCUCAUUGCUCACAGGUAUGUU----UAUAUAGAUUCCUAUU------------ (((((....(((....)))......))))).......((((..((((.......))))...))))..(((...(((----(....)))).)))...------------ ( -22.20, z-score = 0.04, R) >droSec1.super_1 7001128 92 + 14215200 UUCGCAGAGUUGGAAACGAAGUUGGGCGAAGUGGAUCGAGCUAGGGCCAUCUAUGCUCAUUGCUCACAGGUAUGUU----UAUAUAGAUUUCUUUU------------ (((((....(((....)))......)))))..(((((((((..((((.......))))...))))(((....))).----......))))).....------------ ( -22.20, z-score = -0.13, R) >droYak2.chr2R 13673628 94 - 21139217 UUCGCCGAAUUGGAAACCAAGUUGGGCGAAGUGGACCGAGCUAGAGCCAUCUAUGCUCAUUGCUCGCAGGUAUGUUAA--UACAUACAUUUCUACU------------ ((((((.(((((....)..)))).))))))(((((.(((((..((((.......))))...)))))...((((((...--.))))))...))))).------------ ( -35.80, z-score = -4.47, R) >droEre2.scaffold_4845 6257887 94 - 22589142 UUCGCGGAGUUGGAAACGAAGUUGGGCGAAGUGGAUCGUGCUAGAGCCAUCUAUGCGCAUUGCUCACAGGUAUGUUAA--UAUAUACACAGCUAUU------------ ....(((..(((....)))..)))(((...((((...((((((((....)))).))))....).)))..((((((...--.))))))...)))...------------ ( -23.90, z-score = -0.06, R) >droAna3.scaffold_13266 16787219 96 + 19884421 UUUGCGGAGCUGGAGACGAAGCUGGGUGAGGUGGAUCGAGCCCGAGCCAUCUACGCCCAUUGUUCCCAGGUAAG--GUUGCUCAUUCUUCCCUCUUCA---------- .....((((.(((..((((...((((((((((((.(((....))).)))))).))))))))))..)))((.(((--(........)))).)).)))).---------- ( -35.10, z-score = -0.98, R) >dp4.chr3 5179855 90 - 19779522 UUCGCCGAGCUGGAGACGAAGCUGGGCGAGGUGGAUCGAGCCAGAGCCAUCUACGCCCAUUGCUCACAGGUGAGUCG---ACAUUUAACCGUU--------------- ((((((((((((....))....((((((((((((.((......)).)))))).))))))..))))...))))))...---.............--------------- ( -35.00, z-score = -2.24, R) >droPer1.super_4 3006849 90 + 7162766 UUCGCCGAGCUGGAGACGAAGCUGGGCGAGGUGGAUCGAGCCAGAGCCAUCUACGCCCAUUGCUCACAGGUGAGUCG---ACAUUUAACCGUU--------------- ((((((((((((....))....((((((((((((.((......)).)))))).))))))..))))...))))))...---.............--------------- ( -35.00, z-score = -2.24, R) >droWil1.scaffold_180701 3838859 102 + 3904529 UUUGCUGAAUUGGAAACCAAAUUGGGUGAAGUCGAUCGAGCCAGAGCCAUCUAUGCACAUUGCUCGCAGGUAAGUGGCUUGAGAGAGACUUUUAGAUGUCUA------ ((..((.(((((....)..)))).))..)).((..((((((((..(((......((.....)).....)))...))))))))..))(((........)))..------ ( -27.80, z-score = -0.55, R) >droVir3.scaffold_12875 8061022 108 + 20611582 UUUGCGGAGCUGGAGACCAAACUUGGCGAGGUGGAUCGUGCCAGGGCCAUCUAUGCGCAUUGCUCACAGGCAAGUUGCUUCUGGAUAAUCAAAGUGUAAAUUAAAAUU (((((((..((((.(((((..(((...))).))).))...))))..))(((((.(((..(((((....)))))..)))...))))).........)))))........ ( -26.00, z-score = 1.17, R) >droMoj3.scaffold_6496 7665555 93 - 26866924 UUCGCCGAGCUGGAGACAAAGCUGGGCGAGGUGGAUCGCGCCAGAGCCAUCUAUUCGCAUUGCUCACAGGCAAGUCAUAUGCAAAUGAACAUC--------------- .(((((.(((((....)..)))).)))))(((((.((......)).)))))((((.((((((((....))))......)))).))))......--------------- ( -30.60, z-score = -1.14, R) >droGri2.scaffold_15245 1550551 107 + 18325388 UUUGCGGAGCUGGAGACCAAACUGGGUGAAGUGGAUCGCGCCAGGGCCAUCUAUGCGCAUUGCUCGCAGGUGAGUAGCAGUGGAUUACAUAUACCUGCUAAUGCCCC- .....((.((((((..((...((((((((......)))).))))))...)))).))((((((...(((((((.(((((....).))))...))))))))))))))).- ( -31.90, z-score = 1.00, R) >consensus UUCGCCGAGCUGGAAACGAAGCUGGGCGAAGUGGAUCGAGCCAGAGCCAUCUAUGCGCAUUGCUCACAGGUAAGUUG___UAUAUAGAUUUCUAUU____________ (((((..(((((....)..))))..))))).........(((.((((.((........)).))))...)))..................................... (-13.78 = -11.98 + -1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:31 2011