| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,454,775 – 9,454,876 |
| Length | 101 |
| Max. P | 0.574258 |
| Location | 9,454,775 – 9,454,876 |
|---|---|
| Length | 101 |
| Sequences | 7 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 74.25 |
| Shannon entropy | 0.44304 |
| G+C content | 0.44566 |
| Mean single sequence MFE | -34.83 |
| Consensus MFE | -9.15 |
| Energy contribution | -10.36 |
| Covariance contribution | 1.21 |
| Combinations/Pair | 1.16 |
| Mean z-score | -2.85 |
| Structure conservation index | 0.26 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574258 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9454775 101 - 21146708 GCGAAACCUUA-GGAUAUCUUUGAUCUUUUUAUGGAUUCCUU---UGGG-----UUCGUUUGGCCC--GCAUGUUCU---CCGAUUCCACGAA--GGCGUGAGAAUGCGGGCUAUUU (((((.((..(-(((.((((.(((.....))).)))))))).---.)).-----))))).((((((--((((..(((---(((.(((...)))--..)).))))))))))))))... ( -40.10, z-score = -4.25, R) >droPer1.super_4 2980537 116 - 7162766 AUGAAACCUUACCAAAAUCUUUGACUUUUAUAUGGGUUCGUUCCAUGGAG-UUUUUUCUUUAUUCUUAAGAUGAUCUUGCCUGGUGCUAAAAGAUGCCGUGAGAACAUUGUCGAAUA ...................((((((.....((((((.....))))))...-..................((((.(((..(..(((((.....).)))))..))).)))))))))).. ( -19.90, z-score = 0.42, R) >dp4.chr3 5153713 117 + 19779522 AUGAAACCUUACCAAAAUCUUUGACUUUUGUAUGGGUUCGUUCCAUGGAGUUUUUUUUUUUAUUCUUAAGAUGAUCUUGCCUGGUGCUAAAAGAUGCCGUGAGAACAUUGUCGAAUA ..(((.(((...(((((........)))))...))))))(((((((((.(((((((..........((((.....)))).........))))))).))))).))))........... ( -22.51, z-score = -0.34, R) >droEre2.scaffold_4845 6228790 100 + 22589142 GCGAAACCUUA-GGAUAUCUUUGAUCUUUUUAUGGAUUCCUU---UGGG-----UUCGUUUGGCCC--GCAUGUUCU----CGAUUGCCCGAA--GGCGUGAGAAUGCGGGCUACAU (((((.((..(-(((.((((.(((.....))).)))))))).---.)).-----))))).((((((--((((..(((----((...(((....--))).)))))))))))))))... ( -42.90, z-score = -4.87, R) >droYak2.chr2R 13644427 100 + 21139217 GCGAAACCUUA-GGAUAUCUUUGAUCUUUUUAUGGAUUCCUU---UCGG-----UUCACUUGGCCC--GCAUGUUCC----CGAUGCCCCGAG--GGCGUGAGAAUGCGGGCUACAU ..(((.((..(-(((.((((.(((.....))).)))))))).---..))-----)))...((((((--((((.(((.----..((((((...)--)))))))).))))))))))... ( -38.30, z-score = -3.15, R) >droSec1.super_1 6972875 101 - 14215200 GCGAAACCUUA-GGAUAUCUUUGAUCUUUUUAUGGAUUCCUU---UGGG-----UUCGUUUGGCCC--GCAUGUUCU---CCGAUUCCCCGAA--GGCGUGAGAAUGCGGGCUAUAU (((((.((..(-(((.((((.(((.....))).)))))))).---.)).-----))))).((((((--((((..(((---(((.(((...)))--..)).))))))))))))))... ( -40.10, z-score = -3.93, R) >droSim1.chr2R 7898333 101 - 19596830 GCGAAACCUUA-GGAUAUCUUUGAUCUUUUUAUGGAUUCCUU---UGGG-----UUCGUUUGGCCC--GCAUGUUCU---CCGAUUCCCCGAA--GGCGUGAGAAUGCGGGCUACAU (((((.((..(-(((.((((.(((.....))).)))))))).---.)).-----))))).((((((--((((..(((---(((.(((...)))--..)).))))))))))))))... ( -40.00, z-score = -3.85, R) >consensus GCGAAACCUUA_GGAUAUCUUUGAUCUUUUUAUGGAUUCCUU___UGGG_____UUCGUUUGGCCC__GCAUGUUCU___CCGAUUCCCCGAA__GGCGUGAGAAUGCGGGCUACAU ......((....(((.((((.(((.....))).)))))))......))............((((((..((((..((......)).............(....).))))))))))... ( -9.15 = -10.36 + 1.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:25 2011