| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,427,455 – 9,427,530 |
| Length | 75 |
| Max. P | 0.984351 |
| Location | 9,427,455 – 9,427,530 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 58.68 |
| Shannon entropy | 0.79260 |
| G+C content | 0.42687 |
| Mean single sequence MFE | -13.76 |
| Consensus MFE | -6.57 |
| Energy contribution | -6.53 |
| Covariance contribution | -0.04 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.16 |
| SVM RNA-class probability | 0.984351 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9427455 75 - 21146708 GUUUACUCUACUCUCUCUGAUAUCUUUGAGUCUCUUUGUGCUGAGUCACUG-UGAAUUAGCA-CAUCAAUCAAACCC-- ........................(((((.......((((((((.((....-.)).))))))-))....)))))...-- ( -13.80, z-score = -1.28, R) >droSim1.chr2R 7871235 75 - 19596830 GUUUACUCUUCUCUCUCUGCCAGCUUUGUGGCUCUUUGUGCUGAGUCACUG-CGAAUUAGCA-CAUCAAUCAAACCC-- ((((..............((((......))))....((((((((.((....-.)).))))))-))......))))..-- ( -16.60, z-score = -1.65, R) >droSec1.super_1 6946277 75 - 14215200 GUUUACUCUUCUCUCUCUGCCAGCUUUGUGGCUCUUUGUGCUGAGUCACUG-CGAAUUAGCA-CAUCAAUCAAACCC-- ((((..............((((......))))....((((((((.((....-.)).))))))-))......))))..-- ( -16.60, z-score = -1.65, R) >droYak2.chr2R 13613936 57 + 21139217 ------------------GCUCACUUUGUGGCUCUUUGUGCUGAGUCAUUG-CGAGUUAGCA-CAUCAAUCAAACCC-- ------------------(((.((((.(((((((........)))))))..-.)))).))).-..............-- ( -16.10, z-score = -1.88, R) >droEre2.scaffold_4845 6200370 57 + 22589142 ------------------GCUCUCUUUGUGGCUCUCUGUGCUGAGUCACUG-CGAAUUAGCA-CAUCAAUCAAACCC-- ------------------(((.((...(((((((........)))))))..-.))...))).-..............-- ( -13.40, z-score = -1.54, R) >droWil1.scaffold_180701 3770023 73 - 3904529 --GUUUUCAAUUUUCAGUUUUGAUAUCGUGACUUU---UGCUGAGUCAUUGCCAAGUCAUUAGCAUCAAUCAAUCAAA- --................((((((...(((((((.---....)))))))(((.((....)).))).......))))))- ( -10.70, z-score = -0.48, R) >droMoj3.scaffold_6496 2772096 72 + 26866924 ------GUUUUUUCAACUUAAGCCUCAGCAGUUUUUGUUUUUGCCUCGUUCGCAGGCU-UUGUUAGUACUCAAUUUAAA ------........(((..((((((..((((.........))))...(....))))))-).)))............... ( -9.10, z-score = -0.03, R) >consensus ___U__UCUUCUCUCUCUGCUAACUUUGUGGCUCUUUGUGCUGAGUCACUG_CGAAUUAGCA_CAUCAAUCAAACCC__ ...........................(((((((........))))))).............................. ( -6.57 = -6.53 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:24 2011