| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,418,417 – 9,418,515 |
| Length | 98 |
| Max. P | 0.715241 |
| Location | 9,418,417 – 9,418,515 |
|---|---|
| Length | 98 |
| Sequences | 7 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 64.38 |
| Shannon entropy | 0.67675 |
| G+C content | 0.35924 |
| Mean single sequence MFE | -19.72 |
| Consensus MFE | -7.45 |
| Energy contribution | -7.29 |
| Covariance contribution | -0.15 |
| Combinations/Pair | 1.80 |
| Mean z-score | -1.30 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.715241 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9418417 98 + 21146708 UGUACAAAUUUGC-ACCGACGCCCGAAGGUGCAGCUGAUUAUACUUUU----U-UUUUCCACCAACUAGCUAUAAAUUGCAAU--UUUAAUUGGAAAACGGUAGCG------ .........((((-(((..(....)..)))))))..............----.-..............(((((...((.((((--....)))).))....))))).------ ( -18.30, z-score = -0.44, R) >droSim1.chr2R 7860422 98 + 19596830 UGUACAAAUUUGC-ACCGACGCCCGAAGGUGCAGCUGAUUAUACUUUU----U-UUUUCCAACAGCUAGCUAUAAAUUGCAAU--UUUAAUUGCAAAACGGUAGCG------ ...........((-(((..(....)..)))))(((((...........----.-........))))).(((((...(((((((--....)))))))....))))).------ ( -25.65, z-score = -2.53, R) >droSec1.super_1 6937232 102 + 14215200 UGUACAAAUUUGC-ACCGACGCCCGAAGGUGCAGCUGAUUAUACUUUUAUUUU-UUUUUCACCAGCUAGCUAUAAAUUGCAAU--UUUAAUUGGAAAACGGUAGCG------ ...........((-(((..(....)..)))))(((((................-........))))).(((((...((.((((--....)))).))....))))).------ ( -21.36, z-score = -0.98, R) >droYak2.chr2R 13604641 103 - 21139217 UGUACAAAUUUGC-ACCGACGCCCAAAGGUGCAGCUGAUUAUACCUAUACAUUGUUUUUUUUUUACCAGCUAUAAAUUGCAAU--UUUAAUUGCAAAACGGUAGCG------ .........((((-(((..........)))))))..................................(((((...(((((((--....)))))))....))))).------ ( -21.90, z-score = -1.39, R) >droEre2.scaffold_4845 6191207 91 - 22589142 UGUACAAAUUUGC-ACCGACGCCCGAAGGCGCAGCUGAAUUUACUUUU------------UUCCACCAGCUAUAAAUUGCAAU--UUUAAUUGCAAAACGGUAGCG------ ...........((-((((.((((....)))).(((((...........------------......))))).....(((((((--....)))))))..)))).)).------ ( -23.73, z-score = -2.46, R) >droAna3.scaffold_13266 16717043 94 + 19884421 UUUACAAAUUUGCUGCCAACUGCC-----UGCAACCAUUUACCGAUUA------------UUUUAUUACCUAUAA-UUGCAGUGUUUUUAUUGCAAUACGGUAGCUACUUUA ...........((((((...((..-----..))...............------------..............(-((((((((....)))))))))..))))))....... ( -18.80, z-score = -2.38, R) >droWil1.scaffold_180701 1773462 100 + 3904529 ACUCUAAAUUGAUCAAUACCAAACUGUUAUUUGUUGAAUUUAAAUCUU--UUUAACACCUUUUUGUACUGUGUAAAGU-CAAC---UUAUCUAAGGACUUUUAACU------ .........................((((..(((((((..........--)))))))((((.(((.(((......)))-))).---......)))).....)))).------ ( -8.30, z-score = 1.09, R) >consensus UGUACAAAUUUGC_ACCGACGCCCGAAGGUGCAGCUGAUUAUACUUUU____U_UUUUCCUUCAACUAGCUAUAAAUUGCAAU__UUUAAUUGCAAAACGGUAGCG______ ...........((.((((.((((....)))).(((((.............................)))))...........................)))).))....... ( -7.45 = -7.29 + -0.15)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:21 2011