| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,412,570 – 9,412,628 |
| Length | 58 |
| Max. P | 0.931040 |
| Location | 9,412,570 – 9,412,628 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 67 |
| Reading direction | reverse |
| Mean pairwise identity | 74.36 |
| Shannon entropy | 0.44310 |
| G+C content | 0.59074 |
| Mean single sequence MFE | -16.42 |
| Consensus MFE | -11.40 |
| Energy contribution | -10.85 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.931040 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9412570 58 - 21146708 CCGUUGGCCACGGAUUCGGAUU-CCGCCGUGGCUACCACCCAACCAGACCC---AUUUCCAG----- ..(.(((((((((...(((...-)))))))))))).)..............---........----- ( -17.50, z-score = -2.29, R) >droWil1.scaffold_180701 3745826 67 - 3904529 AUGUUUUGCGCGUUUUUGCGUUGCUUUUUUGCCGGUGACGAAACCAAAACCAAAACCUCAACCCAAU ..((((((((((....))))..((......))((....))....))))))................. ( -11.40, z-score = 0.09, R) >droSim1.chr2R 7854668 55 - 19596830 CCGUUGGCCACGGAUUCGGAUU----CCGUGGCUGCCACCCAACCAGACCC---AUUUCCAG----- ..(..(((((((((.......)----))))))))..)..............---........----- ( -18.00, z-score = -2.29, R) >droSec1.super_1 6931437 55 - 14215200 CCGUUGGCCACGGAUUCGGAUU----CCGUGGCUGCCACCCAACCAGAACC---AUUUCCAG----- ..(..(((((((((.......)----))))))))..)..............---........----- ( -18.00, z-score = -2.28, R) >droYak2.chr2R 13598152 55 + 21139217 CCGUUGGCCACGGACUCGGAUU----CCGUGGCUGCCACCCAACCAGACCC---AUUUCGAG----- ..(..(((((((((.......)----))))))))..)..............---........----- ( -17.10, z-score = -1.54, R) >droEre2.scaffold_4845 6185467 55 + 22589142 CCGUUGGCCACGGGCUCGGAUU----CCGUGGCUACCACCCAACCAGACCC---AUUUCGAG----- ..(.((((((((((.......)----))))))))).)..............---........----- ( -16.50, z-score = -1.02, R) >consensus CCGUUGGCCACGGAUUCGGAUU____CCGUGGCUGCCACCCAACCAGACCC___AUUUCCAG_____ ....(((((((((.............)))))))))................................ (-11.40 = -10.85 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:20 2011