| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,409,219 – 9,409,272 |
| Length | 53 |
| Max. P | 0.740385 |
| Location | 9,409,219 – 9,409,272 |
|---|---|
| Length | 53 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 72.24 |
| Shannon entropy | 0.48622 |
| G+C content | 0.57975 |
| Mean single sequence MFE | -12.40 |
| Consensus MFE | -10.52 |
| Energy contribution | -9.75 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.71 |
| Mean z-score | -0.54 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.55 |
| SVM RNA-class probability | 0.740385 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9409219 53 + 21146708 ----GAACCAUUUCCCGCAG-------CCCUGUGGCUCCGUCCGCAGGUCACCCAGAUACAUGA ----...............(-------.(((((((......))))))).).............. ( -11.30, z-score = -0.38, R) >droEre2.scaffold_4845 6182184 53 - 22589142 ----AAACCUUUUCCCGCAG-------CCCUGCGGCUCCGGCCGCAGGUCACCCAGAUACAUGA ----...............(-------.((((((((....)))))))).).............. ( -17.70, z-score = -2.24, R) >droYak2.chr2R 13594839 53 - 21139217 ----GAGCCUUUUCCCGCAG-------CCCUGUGGCUCCGUCCGCAGGUCACCCAGAAACAUGA ----..((........)).(-------.(((((((......))))))).).............. ( -11.90, z-score = -0.04, R) >droSec1.super_1 6928199 53 + 14215200 ----GAACCAUUUCCCGCAG-------CCCUGUGGCUCCGUCCGCAGGUCACCCAGAUACAUGA ----...............(-------.(((((((......))))))).).............. ( -11.30, z-score = -0.38, R) >droSim1.chr2R 7851392 53 + 19596830 ----GAACCAUUUCCCGCAG-------CCCUGUGGCUCCGUCCGCAGGUCACCCAGAUACAUGA ----...............(-------.(((((((......))))))).).............. ( -11.30, z-score = -0.38, R) >droGri2.scaffold_14830 4775879 64 - 6267026 GAAUUAUCACUGUUAGGCAGAAACUGAUUCUAAGUUCGUGACUUUAGGCCAUCCCUAGUGACAG ((((((...(((.....)))....)))))).......((.(((..(((.....)))))).)).. ( -10.90, z-score = 0.19, R) >consensus ____GAACCAUUUCCCGCAG_______CCCUGUGGCUCCGUCCGCAGGUCACCCAGAUACAUGA ............................(((((((......)))))))................ (-10.52 = -9.75 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:19 2011