| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,390,265 – 9,390,320 |
| Length | 55 |
| Max. P | 0.888675 |
| Location | 9,390,265 – 9,390,320 |
|---|---|
| Length | 55 |
| Sequences | 4 |
| Columns | 55 |
| Reading direction | forward |
| Mean pairwise identity | 98.18 |
| Shannon entropy | 0.02950 |
| G+C content | 0.32727 |
| Mean single sequence MFE | -8.90 |
| Consensus MFE | -8.90 |
| Energy contribution | -8.90 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.43 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.888675 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9390265 55 + 21146708 UAUUACUACUGCUAAAUUUGUAAUUCACUUUUAUUUUCAUAGCAGCGUGACCGUG ..((((..((((((.....((((.......)))).....)))))).))))..... ( -8.90, z-score = -1.72, R) >droEre2.scaffold_4845 6163382 55 - 22589142 UAUUACUACUGCUAAAUUUGUAAUUCACUUUUAUUUUCAUAGCAGCGUGACCGUG ..((((..((((((.....((((.......)))).....)))))).))))..... ( -8.90, z-score = -1.72, R) >droYak2.chr2R 13575723 55 - 21139217 UAUUACUACUGCUAAAUUUGUAAUGCACUUUUAUUUUCAUAGCAGCGUGACCGUG ..((((..((((((.....((((.......)))).....)))))).))))..... ( -8.90, z-score = -0.91, R) >droSec1.super_1 6909334 55 + 14215200 UAUUACUACUGCUAAAUUUGUAAUUCACUUUUAUUUUCAUAGCAGCGUGACUGUG ..((((..((((((.....((((.......)))).....)))))).))))..... ( -8.90, z-score = -1.38, R) >consensus UAUUACUACUGCUAAAUUUGUAAUUCACUUUUAUUUUCAUAGCAGCGUGACCGUG ..((((..((((((.....((((.......)))).....)))))).))))..... ( -8.90 = -8.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:18 2011