| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,383,003 – 9,383,079 |
| Length | 76 |
| Max. P | 0.985935 |
| Location | 9,383,003 – 9,383,079 |
|---|---|
| Length | 76 |
| Sequences | 6 |
| Columns | 84 |
| Reading direction | reverse |
| Mean pairwise identity | 94.49 |
| Shannon entropy | 0.10060 |
| G+C content | 0.39244 |
| Mean single sequence MFE | -12.27 |
| Consensus MFE | -11.38 |
| Energy contribution | -11.55 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.22 |
| SVM RNA-class probability | 0.985935 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9383003 76 - 21146708 CCACC-AAACUAAGAAA-------CACGACGACGAUGCCUCAUGGAAACAACACAUCAAAAAUAACUUUUGAUAGGCCAUAGUU .....-.(((((.....-------..((....))..((((..((....))....(((((((.....)))))))))))..))))) ( -12.80, z-score = -2.83, R) >droSim1.chr2R 7833531 76 - 19596830 CCACC-AAACUAAGAAA-------CACGACGACGAUGCCUCAUGGAAACAACACAUCAAAAAUAACUUUUGAUAGGCCAUAGUU .....-.(((((.....-------..((....))..((((..((....))....(((((((.....)))))))))))..))))) ( -12.80, z-score = -2.83, R) >droSec1.super_1 6902242 76 - 14215200 CCACC-AAACUAAGAAA-------CACGACGACGAUGCCUCAUGGAAACAACACAUCAAAAAUAACUUUUGAUAGGCCAUAGUU .....-.(((((.....-------..((....))..((((..((....))....(((((((.....)))))))))))..))))) ( -12.80, z-score = -2.83, R) >droYak2.chr2R 13568316 76 + 21139217 CCACC-AAACUAAGAAA-------CACGACGACGAUGCCUCAUGGAAACAACACAUCAAAAAUAACUUUUGAUAGGCCAUAGUU .....-.(((((.....-------..((....))..((((..((....))....(((((((.....)))))))))))..))))) ( -12.80, z-score = -2.83, R) >droEre2.scaffold_4845 6156102 76 + 22589142 CCACC-AAACUAAGAAA-------CACGACGACGAUGCCUCAUGGAAACAACACAUCAAAAAUAACUUUUGAUAGGCCAUAGUU .....-.(((((.....-------..((....))..((((..((....))....(((((((.....)))))))))))..))))) ( -12.80, z-score = -2.83, R) >droAna3.scaffold_13266 16682125 84 - 19884421 CCACCAAAACUAAAAGAGAACGAUGACGACGACGAUGCCUCAUGAAAAGAACACAUCAAAAAUAACUUUUGAUAGGCCAUAGUU .......(((((........((.((....)).))..((((.((.(((((................))))).))))))..))))) ( -9.59, z-score = -1.19, R) >consensus CCACC_AAACUAAGAAA_______CACGACGACGAUGCCUCAUGGAAACAACACAUCAAAAAUAACUUUUGAUAGGCCAUAGUU .......(((((..............((....))..((((..((....))....(((((((.....)))))))))))..))))) (-11.38 = -11.55 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:17 2011