| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,379,153 – 9,379,227 |
| Length | 74 |
| Max. P | 0.964367 |
| Location | 9,379,153 – 9,379,227 |
|---|---|
| Length | 74 |
| Sequences | 11 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 85.87 |
| Shannon entropy | 0.30694 |
| G+C content | 0.53419 |
| Mean single sequence MFE | -26.92 |
| Consensus MFE | -13.62 |
| Energy contribution | -13.51 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.33 |
| Mean z-score | -3.09 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.73 |
| SVM RNA-class probability | 0.964367 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9379153 74 + 21146708 ACUCACCUGGAAGAACAGCCAGUUGGGAUAGUGGCCCAGUUGGCAGGAGAUGCACGCCGAGAGGGCCACAAACA .((((.((((........)))).))))...(((((((..(((((.(........))))))..)))))))..... ( -32.40, z-score = -3.73, R) >droGri2.scaffold_15112 4935020 72 + 5172618 --UUACCUGAAAGAAAAGCCAGUUUGGAUAGUGACCGAGUUGGCAGGAUAUACACGCCGAUAAAGCCACAAAUA --...............((((..((((.......))))..)))).((.(((........)))...))....... ( -12.30, z-score = -0.79, R) >droMoj3.scaffold_6496 572645 72 - 26866924 --AUACCUGGAAAAACAGCCAGUUCGGGUAGUGGCCUAGUUGGCAGGAUAUACACGCCGAAAGAGCCACAAAUA --.((((((((...........))))))))(((((((..(((((.(........)))))).)).)))))..... ( -23.60, z-score = -2.73, R) >droVir3.scaffold_13324 2577651 74 + 2960039 ACUUACCUGAAAGAAUAGCCAGUUUGGAUAGUGACCAAGUUGACAGGAUAUGCACGCCGAUAGCGCCACAAAUA .....((((...(.....)((..((((.......))))..)).)))).......(((.....)))......... ( -10.00, z-score = 0.69, R) >droPer1.super_4 2096766 74 + 7162766 ACUCACCUGAAAGAAGAGCCAAUUGGGAUAGUGCCCCAGUUGGCAGGAGAUACAGGCCGAGAGCGCCACGAACA .(((..((......)).((((((((((.......))))))))))..))).....((((....).)))....... ( -27.30, z-score = -3.81, R) >dp4.chr3 8216622 74 + 19779522 ACUCACCUGAAAGAAGAGCCAAUUGGGGUAGUGCCCCAGUUGACAGGAGAUACAGGCCGAGAGCGCCACGAACA ..((.((((...(.....)(((((((((.....))))))))).)))).))....((((....).)))....... ( -25.10, z-score = -3.01, R) >droAna3.scaffold_13266 16679110 74 + 19884421 ACUUACCUGGAAGAAGAGCCAGUUGGGAUAGUGUCCCAGCUGGCAGGAUAUACAGGCUGACAGGGCCACGAACA .....((((..((....((((((((((((...)))))))))))).(......)...))..)))).......... ( -30.10, z-score = -3.37, R) >droEre2.scaffold_4845 6152165 74 - 22589142 ACUCACCUGGAAGAACAGCCAGUUGGGAUAGUGGCCCAGUUGGCAGGAGAUGCAUGCCGAUAGGGCCACAAACA .((((.((((........)))).))))...(((((((.(((((((.........))))))).)))))))..... ( -35.40, z-score = -4.69, R) >droYak2.chr2R 13564316 74 - 21139217 ACUCACCUGGAAGAACAGCCAGUUUGGAUAGUGGCCCAGUUGGCAUGAGAUGCAUGCCGACAGGGCCACGAACA ..((..((((........))))........(((((((.(((((((((.....))))))))).)))))))))... ( -35.30, z-score = -5.04, R) >droSec1.super_1 6898392 74 + 14215200 ACUCACCUGGAAGAACAGCCAGUUGGGAUAGUGGCCCAGUUGGCAGGAGAUGCACGCAGACAGGGCCACGAACA .((((.((((........)))).))))...(((((((.(((.(((.....))).....))).)))))))..... ( -29.80, z-score = -3.09, R) >droSim1.chr2R 7829718 74 + 19596830 ACUCACCUGGAAGAACAGCCAGUUGGGAUAGUGGCCCAGUUGGCAGGAGAUGCACGCCGACAGGGCCACGAACA .((((.((((........)))).))))...(((((((.((((((.(........))))))).)))))))..... ( -34.80, z-score = -4.40, R) >consensus ACUCACCUGGAAGAACAGCCAGUUGGGAUAGUGGCCCAGUUGGCAGGAGAUGCACGCCGACAGGGCCACGAACA .................((((((((((.......))))))))))...........((.......))........ (-13.62 = -13.51 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:16 2011