| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,371,993 – 9,372,069 |
| Length | 76 |
| Max. P | 0.723779 |
| Location | 9,371,993 – 9,372,069 |
|---|---|
| Length | 76 |
| Sequences | 3 |
| Columns | 76 |
| Reading direction | reverse |
| Mean pairwise identity | 75.12 |
| Shannon entropy | 0.32293 |
| G+C content | 0.34509 |
| Mean single sequence MFE | -13.37 |
| Consensus MFE | -6.95 |
| Energy contribution | -7.29 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.32 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.723779 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9371993 76 - 21146708 UGGGAAGGUGUAACACAUAUCUUUGCACUUUUCAAUACAUUUUCCCGUUCAUAAACUGCAAAUUUCUGCAUCUGCU .(((((((((((.......................)))))))))))..........((((......))))...... ( -15.50, z-score = -2.15, R) >droSec1.super_1 6891272 59 - 14215200 UCGGAAGGUGUAU--CAAAUCUGAGCACUUUUCAAUA------------UAUAAACUGCAAUUUUCUCCAUCU--- ..(((((((((.(--((....))))))))))))....------------........................--- ( -11.40, z-score = -2.60, R) >droSim1.chr2R 7822585 61 - 19596830 UGGGAAGGUGUAUAACAAAUCUGAGCAGUUUUCAAUA------------UAUAAACUGCAAUUUUCUCCAUCU--- (((((((((......((....)).(((((((......------------...))))))).)))))).)))...--- ( -13.20, z-score = -2.20, R) >consensus UGGGAAGGUGUAU_ACAAAUCUGAGCACUUUUCAAUA____________UAUAAACUGCAAUUUUCUCCAUCU___ ..(((((((((.............)))))))))........................................... ( -6.95 = -7.29 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:16 2011