| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,366,601 – 9,366,702 |
| Length | 101 |
| Max. P | 0.664098 |
| Location | 9,366,601 – 9,366,702 |
|---|---|
| Length | 101 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 65.73 |
| Shannon entropy | 0.64242 |
| G+C content | 0.35370 |
| Mean single sequence MFE | -25.95 |
| Consensus MFE | -10.90 |
| Energy contribution | -11.77 |
| Covariance contribution | 0.87 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.16 |
| Structure conservation index | 0.42 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.37 |
| SVM RNA-class probability | 0.664098 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9366601 101 + 21146708 UCAACA-AGCUGCCAGU--UGUGGAAAGUUU---AACCGAGCUUUGAAUAGUAUGAUUAAAGGUUUAGUUGAUUAAUUGCAAUUCAUGAGCUCAUUUGGUGUUAGUA------------- ...((.-(((.(((((.--...((.......---..))(((((((((((.((((((((((........)))))))..))).))))).))))))..)))))))).)).------------- ( -22.70, z-score = -1.00, R) >droWil1.scaffold_180701 1098244 97 - 3904529 UCAAUACAAUUUUCAGUGUUGUUUAAUGCUAUUUACAUUUGCCUUUGCAAAUAAAUUGACUUGUUCCAAAAACUAUUUGGUUGUAUGACAUUUAAGA----------------------- .((((((........))))))....((((.......((((((....)))))).............(((((.....)))))..))))...........----------------------- ( -12.60, z-score = 0.62, R) >droSim1.chr2R 7815539 114 + 19596830 UCAACA-GCUUGCCAGC--UGUGGAAAGUUU---AAGCGAGCUUUGAAUAGUAUGAUUAAAGGUUAAGUUGAUUAAUUGCAAUUCAAGAGCUCAUUUGGUGUCAUUCCUUGCGGGCAAUA ......-..(((((.((--...((((.(.((---(((.(((((((((((.((((((((((........)))))))..))).)))).))))))).)))))...).))))..)).))))).. ( -31.90, z-score = -1.57, R) >droSec1.super_1 6885922 114 + 14215200 UAAACA-AGCUGCCAGU--UGUGGAAAGUUU---AAGCGAGCUUUGAAUAGUAUGAUUAAAGGUUAAGUUGAUUAAUUGCAAUUCAAGAGCUCAUUUGGUGUCAUUCCUUGCGGGCAAUA ......-...((((.((--...((((.(.((---(((.(((((((((((.((((((((((........)))))))..))).)))).))))))).)))))...).))))..)).))))... ( -29.60, z-score = -1.51, R) >droYak2.chr2R 13548706 114 - 21139217 UCAACA-AUCUGUCGGU--UGUGGAAAGCUU---ACACGAGCUUGGAAUAGUAUGAUUAAAAGUUUAGUUGAUUAAUUGCAAUUCAACAGCUCAUGUAGUGCAUUUCCCUACGGUCAGUA ......-..(((.(.((--.(.(((((((((---(((.(((((..((((.((((((((((........)))))))..))).))))...))))).))))).)).)))))).)).).))).. ( -32.60, z-score = -2.89, R) >droEre2.scaffold_4845 6139474 117 - 22589142 UCAACA-AUCUGUCAGU--UGUGAAAAGUUUGUGAAACGAGCUUGGAAUAGUAUGAUUAAAGUUUUAGUUGAUUAAUUGCAUUUCCAGAGCUCAAGUGGUGCAUUUCCCUACGGCCACUA (((.((-(.((.(((..--..)))..)).))))))...((((((((((..((((((((((........)))))))..)))..))))).))))).((((((.............)))))). ( -26.32, z-score = -0.64, R) >consensus UCAACA_AGCUGCCAGU__UGUGGAAAGUUU___AAACGAGCUUUGAAUAGUAUGAUUAAAGGUUUAGUUGAUUAAUUGCAAUUCAAGAGCUCAUGUGGUGUAAUUCC_U_CGG_CA_UA ......................................(((((((((((.((((((((((........)))))))..))).))))).))))))........................... (-10.90 = -11.77 + 0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:12 2011