| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,364,049 – 9,364,140 |
| Length | 91 |
| Max. P | 0.997915 |
| Location | 9,364,049 – 9,364,140 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 99 |
| Reading direction | reverse |
| Mean pairwise identity | 90.53 |
| Shannon entropy | 0.17342 |
| G+C content | 0.55345 |
| Mean single sequence MFE | -33.38 |
| Consensus MFE | -28.88 |
| Energy contribution | -29.30 |
| Covariance contribution | 0.42 |
| Combinations/Pair | 1.18 |
| Mean z-score | -3.62 |
| Structure conservation index | 0.87 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.21 |
| SVM RNA-class probability | 0.997915 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9364049 91 - 21146708 UCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC----CCAGGCCCAAAAUCAUG---- ..(((((((((((((......)))).)))))))))...((((....(((((....)))))....(((((.....----...))))).....))))---- ( -35.80, z-score = -4.32, R) >droSim1.chr2R 7812979 91 - 19596830 UCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC----CCAGGCCCAAAAUCAUG---- ..(((((((((((((......)))).)))))))))...((((....(((((....)))))....(((((.....----...))))).....))))---- ( -35.80, z-score = -4.32, R) >droSec1.super_1 6883382 91 - 14215200 UCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC----CCAGGCCCAAAAUCAUG---- ..(((((((((((((......)))).)))))))))...((((....(((((....)))))....(((((.....----...))))).....))))---- ( -35.80, z-score = -4.32, R) >droYak2.chr2R 13546100 95 + 21139217 UCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGACCAAACCAGGCCCAAAAUCAUG---- ..(((((((((((((......)))).)))))))))...((((....(((((....)))))....(((((..(......)..))))).....))))---- ( -35.40, z-score = -4.22, R) >droEre2.scaffold_4845 6136858 91 + 22589142 UCGUGCGUUGCUUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC----CCAGGCCCAAAAUCAUG---- ..(((((((((((((......))).))))))))))...((((....(((((....)))))....(((((.....----...))))).....))))---- ( -33.40, z-score = -3.47, R) >droAna3.scaffold_13266 16664459 94 - 19884421 UCGUGCGUUACUUGCAACGCAGCGAAGCAGCGCAUAAACAUGCACAUCGUUAAGACUC-UGGCCAGAGCCAGAC----CGAGGUCCAAACCCAUACCCA (((((((((......)))))).)))....(.((((....)))).)...(((..(((((-((((....)))))).----....)))..)))......... ( -24.10, z-score = -1.07, R) >consensus UCGUGCGUUGCCUGCAACGCAGCAGAGCAGCGCAUAAACAUGCACAUCGUUAAGAGACGAGACCGGGCUCAGAC____CCAGGCCCAAAAUCAUG____ ..(((((((((((((......)))).)))))))))...((((....(((((....)))))....(((((..(......)..))))).....)))).... (-28.88 = -29.30 + 0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:11 2011