| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,734,436 – 2,734,536 |
| Length | 100 |
| Max. P | 0.667143 |
| Location | 2,734,436 – 2,734,536 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 71.96 |
| Shannon entropy | 0.43838 |
| G+C content | 0.30930 |
| Mean single sequence MFE | -15.62 |
| Consensus MFE | -10.77 |
| Energy contribution | -10.53 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.69 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.667143 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2734436 100 - 23011544 AUAUGGCGUAAGCUUUAAUUAAAUUAAAGUCAUUUGUCAAGGCAUCAGCUUAUGUGUUUAAUUACUUAUAUAAUAUUGUAAGACAACCUUCAUGACAACA .((.(((....))).))...........((((((((((.((((....))))..............(((((......)))))))))).....))))).... ( -17.10, z-score = -0.72, R) >droEre2.scaffold_4929 2787025 88 - 26641161 -----CUAUGGCGUAAGUAUUGCUCAAAGUGAUUUGUCAAGGCAUCAGCGUA--UGC---AUUAAUUACAUAAAACUGUAAUACAAACUUCAUGGCAA-- -----((((((((((.((..((((((((....))))....))))...)).))--)))---....((((((......))))))........)))))...-- ( -18.50, z-score = -0.90, R) >droSec1.super_5 900643 81 - 5866729 ----------------AUAUAAACU-GAGCCAUUUGUCAAGGCAUCAGCUUA--UGUUUAAUUACUUAUAUAAUAUUGUAAGACAACCUUCAUGACAACA ----------------((((((.((-(((((.........))).)))).)))--))).......((((((......)))))).................. ( -14.90, z-score = -1.88, R) >droSim1.chr2L 2694858 81 - 22036055 ----------------AUAUAAACU-GAGCCAUUUGUCAAGGCAUCAGCUUA--UGUUUAAUUACUUAUAUAAUAUUGCAAGACAACCUUCAUGACAACA ----------------((((((.((-(((((.........))).)))).)))--)))..................(((((.((......)).)).))).. ( -12.00, z-score = -0.72, R) >consensus ________________AUAUAAACU_AAGCCAUUUGUCAAGGCAUCAGCUUA__UGUUUAAUUACUUAUAUAAUAUUGUAAGACAACCUUCAUGACAACA .................................((((((((((....)))).............((((((......))))))..........)))))).. (-10.77 = -10.53 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:09 2011