| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,360,320 – 9,360,420 |
| Length | 100 |
| Max. P | 0.764430 |
| Location | 9,360,320 – 9,360,420 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 83.19 |
| Shannon entropy | 0.27695 |
| G+C content | 0.45338 |
| Mean single sequence MFE | -19.40 |
| Consensus MFE | -18.00 |
| Energy contribution | -18.00 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.93 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.764430 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9360320 100 + 21146708 GGAGACUGCGGCUCUCGAUAAAUUUGGCCGUAAUCUCGAUAAUGAUUAUGUUUGCAUUGUUGUUCGUUCGUCCCCCCCCCCUUCCCCUAAGCAUACCCAU .((((.(((((((............))))))).))))((.((..((.(((....))).))..))...))............................... ( -18.80, z-score = -0.68, R) >droEre2.scaffold_4845 6133079 85 - 22589142 GGAGACUGCGGCUCUCGAUAAAUUUGGCCGUAAUCUCGAUAAUGAUUAUGUUUGCAUUGUUGUUUGUU--UCCCC-GCGCAUUUCUUU------------ (((((((((((((............)))))))....((((((((..........))))))))...)))--)))..-............------------ ( -20.30, z-score = -1.18, R) >droYak2.chr2R 13542256 86 - 21139217 GGAGACUGCGGCUCUCGAUAAAUUUGGCCGUAAUCUCGAUAAUGAUUAUGUUUGCAUUGUUGUUUGUU--UCCCCCGUGUUUUCCUUU------------ (((((..((((.....(((((((...(((((((((........)))))))...))......)))))))--....))))..)))))...------------ ( -20.70, z-score = -2.19, R) >droSec1.super_1 6879542 92 + 14215200 GGAGACUGCGGCUCUCGAUAAAUUUGGCCGUAAUCUCGAUAAUGAUUAUGUUUGCAUUGUUGUUCGUG--CCCCUCGCCCCUCUAUAAACCCAU------ ((((...(((((...(((..(((...(((((((((........)))))))...))...)))..))).)--))....))..))))..........------ ( -18.60, z-score = -0.56, R) >droSim1.chr2R 7808882 92 + 19596830 GGAGACUGCGGCUCUCGAUAAAUUUGGCCGUAAUCUCGAUAAUGAUUAUGUUUGCAUUGUUGUUCGUG--CCCCUCGCCCCUCUAUAUACCCAU------ ((((...(((((...(((..(((...(((((((((........)))))))...))...)))..))).)--))....))..))))..........------ ( -18.60, z-score = -0.41, R) >consensus GGAGACUGCGGCUCUCGAUAAAUUUGGCCGUAAUCUCGAUAAUGAUUAUGUUUGCAUUGUUGUUCGUU__UCCCCCGCCCCUUUCUAUA__CAU______ .((((.(((((((............))))))).))))(((((((..........)))))))....................................... (-18.00 = -18.00 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:10 2011