| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,356,673 – 9,356,767 |
| Length | 94 |
| Max. P | 0.828161 |
| Location | 9,356,673 – 9,356,767 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 90.88 |
| Shannon entropy | 0.12566 |
| G+C content | 0.27107 |
| Mean single sequence MFE | -18.17 |
| Consensus MFE | -16.18 |
| Energy contribution | -15.97 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.13 |
| Mean z-score | -1.75 |
| Structure conservation index | 0.89 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.828161 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9356673 94 - 21146708 GCUGAUUAAGC-AAUUUAUAGUUUGAGAUACACUUCAUUAAAAACAUGUUUACAUAUUGAAUAAUAUUGUAAGCAUUGUAAGCUCAUAAUUCUUC (((.....)))-...((((((((((.((......)).........(((((((((((((....)))).)))))))))..)))))).))))...... ( -15.00, z-score = -0.46, R) >droSim1.chr2R 7805071 95 - 19596830 GCUCAUUAAGCAAAAUUAUAGUUUGAGAUACACCUCAUUAAAUACAUGUUUACAUAUUGAAAAAUAUUGUAAGCAUUGUAAGCUCUUAAUUCAUC (((.....)))..(((((.((((((((......)))).....((((((((((((((((....)))).)))))))).))))))))..))))).... ( -19.70, z-score = -2.87, R) >droSec1.super_1 6875851 95 - 14215200 GCUCAUUAAGCAAAAUUGUAGCUUGAGAUACACCUCAUUAUAUACAUGUUUACAUAUUGAAUAAUAUUGUAAGCAUUCUGAGCUCAUAAUUCAUC (((((...........((((...((((......)))).....))))((((((((((((....)))).))))))))...)))))............ ( -19.80, z-score = -1.91, R) >consensus GCUCAUUAAGCAAAAUUAUAGUUUGAGAUACACCUCAUUAAAUACAUGUUUACAUAUUGAAUAAUAUUGUAAGCAUUGUAAGCUCAUAAUUCAUC (((.....)))..((((((((((((((......))).........(((((((((((((....)))).)))))))))...))))).)))))).... (-16.18 = -15.97 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:08 2011