| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,351,906 – 9,351,967 |
| Length | 61 |
| Max. P | 0.865924 |
| Location | 9,351,906 – 9,351,967 |
|---|---|
| Length | 61 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 98.03 |
| Shannon entropy | 0.03183 |
| G+C content | 0.42623 |
| Mean single sequence MFE | -14.22 |
| Consensus MFE | -14.46 |
| Energy contribution | -14.22 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.19 |
| Structure conservation index | 1.02 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.98 |
| SVM RNA-class probability | 0.865924 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9351906 61 - 21146708 GCAAUGGGGAAGAGCUUCAUCAUCAAGGUGAUCAUGGGGACCAUGAUUAUUAUUAUCGUAC ((.((((((.....))))))......(((((((((((...)))))))))))......)).. ( -14.10, z-score = -1.17, R) >droEre2.scaffold_4845 6124640 61 + 22589142 GCAGUGGGGAAGAGCUUCAUCAUCAAGGUGAUCAUGGGUACCAUGAUUAUUAUUAUCGUAC ((.((((((.....))))))......(((((((((((...)))))))))))......)).. ( -14.40, z-score = -1.23, R) >droYak2.chr2R 13533737 61 + 21139217 GCAGUGGGGAAGAGCUUCAUCAUCAAGGUGAUCAUGGGUACCAUGAUUAUUAUUAUCGUAC ((.((((((.....))))))......(((((((((((...)))))))))))......)).. ( -14.40, z-score = -1.23, R) >droSec1.super_1 6871185 61 - 14215200 GCAAUGGGGAAGAGCUUCAUCAUCAAGGUGAUCAUGGGGACCAUGAUUAUUAUUAUCGUAC ((.((((((.....))))))......(((((((((((...)))))))))))......)).. ( -14.10, z-score = -1.17, R) >droSim1.chr2R 7800438 61 - 19596830 GCAAUGGGGAAGAGCUUCAUCAUCAAGGUGAUCAUGGGGACCAUGAUUAUUAUUAUCGUAC ((.((((((.....))))))......(((((((((((...)))))))))))......)).. ( -14.10, z-score = -1.17, R) >consensus GCAAUGGGGAAGAGCUUCAUCAUCAAGGUGAUCAUGGGGACCAUGAUUAUUAUUAUCGUAC ((.((((((.....))))))......(((((((((((...)))))))))))......)).. (-14.46 = -14.22 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:07 2011