| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,349,803 – 9,349,916 |
| Length | 113 |
| Max. P | 0.748044 |
| Location | 9,349,803 – 9,349,916 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 90.31 |
| Shannon entropy | 0.16845 |
| G+C content | 0.55843 |
| Mean single sequence MFE | -45.88 |
| Consensus MFE | -35.72 |
| Energy contribution | -36.72 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.02 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.748044 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9349803 113 - 21146708 AUGGAGGAACAGUGC--CGUGGCAUGAGCAGUGAGCAUACCGAACGGAUGGUUGACUAGAUGGAUGGCCGGCAUCCUGGCAUCCUGGCAGCCAACUGGUGAACUGUUCUGCCAUU ((((.((((((((((--((..((....))..)).))........(((.((((((.(((...(((((.((((....)))))))))))))))))).)))....)))))))).)))). ( -44.00, z-score = -1.65, R) >droSim1.chr2R 7798002 114 - 19596830 AUGGAGGAGCAGUGCCGCGUGGCAUGAGCAGUG-GCAUACCGUACGGAUGGUUGACUAGAUGGAUGCCCGGCAUCCUGGCAUCAUGGCAGCCAACUGGUGAACUGUUCUGCCAUU ((((.(((((((((((((...((....)).)))-))........(((.((((((.(((....((((((.((...)).)))))).))))))))).)))....)))))))).)))). ( -51.20, z-score = -2.63, R) >droSec1.super_1 6868761 114 - 14215200 AUGGAGGAGCAGUGCCGCGUGGCAUGAGCAGUG-GCAUACCGUACGGAUGCUUGACUAGAUGGAUGCCCGGCAUCCUGGCAUCAUGGCAGCCAACUGGUGAACUGUUCUGCCAUU ((((.(((((((((((((...((....)).)))-)).(((((...((.((((..........((((((.((...)).))))))..)))).))...))))).)))))))).)))). ( -46.50, z-score = -1.33, R) >droYak2.chr2R 13531365 109 + 21139217 AUGGAGCAG-AGC----UGUGGCAUGAGCAGUG-GCAUAGCGUACGGAUGGUUGACUAGAUGGAUGCCCGGCAUCCUGGCAUCCUGGCAGCCAACUGGUGAACUGUUCUGCCAUU ..(((((((-.((----((((.(((.....)))-.))))))...(((.((((((.(((...(((((((.((...)).)))))))))))))))).))).....)))))))...... ( -48.50, z-score = -2.59, R) >droEre2.scaffold_4845 6122098 101 + 22589142 AUGGAGGAG-AGU----CGUGGCAUGAGCAGUG-GCAUACCAUACGGAUGGUUGACUAGAUGGAUGCCCAGCAUCC--------UGGCAGCCAACUGGUGAACUGUUCUGCCAUU .........-...----.((((((.((((((((-(....))...(((.((((((.(((...((((((...))))))--------))))))))).)))....))))))))))))). ( -39.20, z-score = -1.91, R) >consensus AUGGAGGAGCAGUGC__CGUGGCAUGAGCAGUG_GCAUACCGUACGGAUGGUUGACUAGAUGGAUGCCCGGCAUCCUGGCAUCAUGGCAGCCAACUGGUGAACUGUUCUGCCAUU ..................((((((.(((((((...(((......(((.((((((.((((((((((((...))))))....))).))))))))).)))))).))))))))))))). (-35.72 = -36.72 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:20:06 2011