| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,731,942 – 2,732,044 |
| Length | 102 |
| Max. P | 0.883461 |
| Location | 2,731,942 – 2,732,044 |
|---|---|
| Length | 102 |
| Sequences | 7 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 58.07 |
| Shannon entropy | 0.78200 |
| G+C content | 0.46881 |
| Mean single sequence MFE | -30.36 |
| Consensus MFE | -8.47 |
| Energy contribution | -7.03 |
| Covariance contribution | -1.44 |
| Combinations/Pair | 1.93 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883461 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2731942 102 + 23011544 UUGCCGCCACUUUAU---UCGUUAUAUCUCUUGGCUAUAUAGUCGCCUAUGUGUGCGUGUGUGCGUCGUAUGGGUGAAAGAA-----UGCGCCCCAAGUGGCUUGAAAUC .....((((((((((---((((((.......)))).......(((((((((((.((((....)))))))))))))))..)))-----))......)))))))........ ( -29.10, z-score = -1.24, R) >droSim1.chr2L 2692432 100 + 22036055 UUGCCGCCACUUUAU---UCGUUAUAUCUCUUGGCUAUAUAGUCGCAUAUGUGUG--UGUGUGCGUUGUAUGGGUGAGAGAA-----UGCGCCCCAAGUGGCUUGAAAUC .....(((((((...---.(((....(((((((.((((((((.(((((((.....--.))))))))))))))).))))))).-----.)))....)))))))........ ( -38.90, z-score = -4.72, R) >droSec1.super_5 898287 98 + 5866729 UUGCCGCCACUUUAU---UCGUUAUAUCUCUUGGCUAUAUAGUCGCAUAUGUGUG----UGUGCGUUGUACGGGUGAGAGAA-----UGCGCCCCAAGUGGCUUGAAAUC .....(((((((...---.(((....(((((((.(..(((((.(((((((....)----)))))))))))..).))))))).-----.)))....)))))))........ ( -35.40, z-score = -3.50, R) >droYak2.chr2L 2726568 83 + 22324452 UUGCCUCCACUUAAU---UUAU-AUAUCUCUUGGCCAUAUGAACGUAUAUAUAUU----UAUAUGUAUAUGAGAUGAGAAUGC----UUGAAAUC--------------- ...............---....-.((((((.((..((((((((..(....)..))----))))))..)).)))))).......----........--------------- ( -12.40, z-score = -0.29, R) >droEre2.scaffold_4929 2784719 83 + 26641161 UUGCCGCCACUUUAU---UCGUUAUAUCUCUUGGCAAUAGAGUCACACAGUCGUA----UAUGUGUGGUUUGGGUGGGAGAA-----UUGAAAUC--------------- ((.((((((((((((---(.((((.......))))))))))))((((((......----..)))))).....))))).))..-----........--------------- ( -24.00, z-score = -2.15, R) >droPer1.super_10 1071958 95 + 3432795 UUGCCUCCACUUUACCCAUCAUGAUAUCUCUCGUCGGC--GACUGAGCGCCUGUGACUGUGUUCGAGGGGCGGUGGGGGG-------------GCACACGUUUUGAUAUC .(((((((...(..(((.((..(((((...(((..(((--(......))))..)))..))))).)).)))..)...))))-------------))).............. ( -30.30, z-score = 0.16, R) >dp4.chr4_group4 2066864 108 + 6586962 UUGCCUCCACUUUACCCAUCAUGAUAUCUCUCGUCGGC--GACUGAGCGCCUGUGACAGUGUUCGAGGGGCAGUGGGGGGUGGGGGGUGGGGGGCACACGUUUUGAUAUC .(((((((.((((((((..(((....(((((((((...--))).((((((........))))))))))))..)))..))))))))....))))))).............. ( -42.40, z-score = -1.07, R) >consensus UUGCCGCCACUUUAU___UCGUUAUAUCUCUUGGCUAUAUAGUCGCAUAUGUGUG___GUGUGCGUGGUACGGGUGAGAGAA_____UGCGCCCCAAGUGGCUUGAAAUC ...........................((((((.(.((.....((((((..........))))))....)).).)))))).............................. ( -8.47 = -7.03 + -1.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:08 2011