| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,318,188 – 9,318,252 |
| Length | 64 |
| Max. P | 0.733940 |
| Location | 9,318,188 – 9,318,252 |
|---|---|
| Length | 64 |
| Sequences | 11 |
| Columns | 73 |
| Reading direction | reverse |
| Mean pairwise identity | 84.05 |
| Shannon entropy | 0.33406 |
| G+C content | 0.47164 |
| Mean single sequence MFE | -16.78 |
| Consensus MFE | -14.34 |
| Energy contribution | -14.50 |
| Covariance contribution | 0.16 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.09 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.733940 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9318188 64 - 21146708 -UAUGAGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAAUUUUUUUU -.......(((..--------.((((((...))))))(((((.......)))))....)))............ ( -16.50, z-score = -0.98, R) >droSim1.chr2R 7771786 65 - 19596830 UUAUGAGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAAUUUUUUUU ........(((..--------.((((((...))))))(((((.......)))))....)))............ ( -16.50, z-score = -0.99, R) >droSec1.super_1 6836524 64 - 14215200 -UAUGAGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAACUUUUUUU -.......(((.(--------(((((((...))))))(((((.......)))))......)).)))....... ( -18.00, z-score = -1.45, R) >droYak2.chr2R 13497595 64 + 21139217 -UAUGGGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAUCUUUUUUU -.......(((..--------.((((((...))))))(((((.......)))))....)))............ ( -16.50, z-score = -0.60, R) >droEre2.scaffold_4845 6089383 64 + 22589142 -UAUGAGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAACUUUUUUU -.......(((.(--------(((((((...))))))(((((.......)))))......)).)))....... ( -18.00, z-score = -1.45, R) >droAna3.scaffold_13266 16620339 64 - 19884421 -UGUGAGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAAUUUUUUGU -(((.((......--------.((((((...))))))(((((.......)))))..)).)))........... ( -18.80, z-score = -1.48, R) >dp4.chr3 6225245 62 + 19779522 --UUGAGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAACUUUUUUU- --......(((.(--------(((((((...))))))(((((.......)))))......))))).......- ( -16.80, z-score = -0.83, R) >droPer1.super_2 8065789 63 - 9036312 --UUGAGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAACCUUUUUUG --..(((.(((.(--------(((((((...))))))(((((.......)))))......))))))))..... ( -18.00, z-score = -1.15, R) >droVir3.scaffold_12875 9195521 52 + 20611582 ------------C--------AGUCUACUCUGUAGGCGUGGGUUCGAAUCCCACUUCUGACAAAUUCUUUUU- ------------.--------.((((((...))))))(((((.......)))))..................- ( -13.80, z-score = -2.38, R) >droMoj3.scaffold_6496 13657775 63 - 26866924 -UAUGAGCGUUCU--------GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAAUCUUUUU- -...(((.(((.(--------(((((((...))))))(((((.......)))))......)).))))))...- ( -16.60, z-score = -0.93, R) >anoGam1.chr2R 48736495 72 - 62725911 -UAUGAGCGAACUGAGUAAGAGGAACACUUGUGAAGCGUGGGUUCGAAUCCCACUUCUGACAUGAGCUUGUUG -....(((((.((.(((.((((...((....))....(((((.......))))))))).)).).)).))))). ( -15.10, z-score = 0.26, R) >consensus _UAUGAGCGUUCU________GGUCCUCUCUGAGGGCGUGGGUUCGAAUCCCACUUCUGACAAAAUUUUUUUU ......................((((((...))))))(((((.......)))))................... (-14.34 = -14.50 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:59 2011