| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,314,483 – 9,314,583 |
| Length | 100 |
| Max. P | 0.869376 |
| Location | 9,314,483 – 9,314,583 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 75.05 |
| Shannon entropy | 0.42070 |
| G+C content | 0.51495 |
| Mean single sequence MFE | -21.58 |
| Consensus MFE | -12.82 |
| Energy contribution | -13.46 |
| Covariance contribution | 0.64 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869376 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9314483 100 - 21146708 -----UAGAAAGCUACAAAGUCUCUUCAUUAGCCUCCGAUUUCCGAGGUCGAUGAUCGCUGCUGGACUUUCCUAUCCACCUACG-CUCCCCACCCCCCAAAAAAAC -----..((((((((...(((....((((..(((((.(....).)))))..))))..)))..))).))))).............-..................... ( -20.80, z-score = -2.50, R) >droEre2.scaffold_4845 6085788 92 + 22589142 AGAAGCAAAAAGCGACAAAGGCGCUUCAUUAGCUACCCAUUUCCGAGGUCGAUGAUC---GCUGGACUUUCCUAUCCGUCCACGCCCCCAAAAAC----------- ...........(((.....((((..((((..(((.(........).)))..)))).)---)))((((..........)))).)))..........----------- ( -19.50, z-score = -0.60, R) >droYak2.chr2R 13493337 87 + 21139217 -----UAAAAAGCCACGAAGGCGCUUCAUUAGCUACCCAUUUCCGAGGUCGAUGAUC---GCCGGACGCUCCUAUCCGUCUACGUCCCCAAAAAC----------- -----.........(((..((((..((((..(((.(........).)))..)))).)---)))(((((........))))).)))..........----------- ( -20.00, z-score = -1.04, R) >droSec1.super_1 6832964 96 - 14215200 -----UAGAAAGCUACAAAGGCGCUUCAUUAGCUUCCGAUUUCCGAGGUCGAUGAUCGCUGCUGUACUUUCCUAUCC----ACGCCUACGCCUCCCCCCAAAAAC- -----..(((((.((((..((((..((((..(((((.(....).)))))..)))).))))..)))))))))......----........................- ( -25.30, z-score = -3.01, R) >droSim1.chr2R 7768110 101 - 19596830 -----UAGAAAGCUACAAAGGCGCUUCAUUAGCUUCCGAUUUCCGAGGUCGAUGAUCGCUGCUGGACUUUCCUAUCCACCUACGCCUACCCCCUCCCCCCAAAAAC -----..((((((((....((((..((((..(((((.(....).)))))..)))).))))..))).)))))................................... ( -22.30, z-score = -1.86, R) >consensus _____UAGAAAGCUACAAAGGCGCUUCAUUAGCUUCCGAUUUCCGAGGUCGAUGAUCGCUGCUGGACUUUCCUAUCCACCUACGCCUCCACAAACCCC__AAAA__ ...................((((..((((..(((((........)))))..)))).......((((........))))....)))).................... (-12.82 = -13.46 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:57 2011