| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,278,914 – 9,279,014 |
| Length | 100 |
| Max. P | 0.883173 |
| Location | 9,278,914 – 9,279,014 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 93.00 |
| Shannon entropy | 0.09850 |
| G+C content | 0.48475 |
| Mean single sequence MFE | -27.17 |
| Consensus MFE | -24.54 |
| Energy contribution | -24.43 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.92 |
| Structure conservation index | 0.90 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.06 |
| SVM RNA-class probability | 0.883173 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9278914 100 - 21146708 UAGGAUUACAGCCAGCGAAUCAGCUCUGCACAGAGGGAACCAAUCGAACAGGCAUCUUCCACGAAGGGCUUCCGAUACCCAAGUUGGUAUUUAUCCGACU ..((((....((((((...((..((((....)))).))....((((...((((.(((((...))))))))).))))......))))))....)))).... ( -27.00, z-score = -1.41, R) >droSim1.chr2R 7736802 99 - 19596830 -AGGACUACAGCCAGCGAAUCAGCUCUGCACAGAGGAAACCAAUCGAACAGGUAUCCUCCAAGAAGGGCUUCCGAUACCCAACUUGGUAUUUAUCCAAGU -.(((....(((((((......)))((.....(((((.(((.........))).))))).....)))))))))........((((((.......)))))) ( -27.60, z-score = -2.10, R) >droSec1.super_1 6801955 98 - 14215200 UAGGAUUACAGCCAGCGAAUCAGCUCUGCACAGAGGAAACCAAUCGAACAGGUAUCCUCCAAGAAGGGCUUCCGAUACCCAACUUGGUAUUUAUCCAA-- ..(((((((.((.(((......)))..))...(((((.(((.........))).)))))((((..(((.........)))..)))))))...))))..-- ( -26.90, z-score = -2.27, R) >consensus UAGGAUUACAGCCAGCGAAUCAGCUCUGCACAGAGGAAACCAAUCGAACAGGUAUCCUCCAAGAAGGGCUUCCGAUACCCAACUUGGUAUUUAUCCAA_U ..(((....(((((((......)))((.....(((((.(((.........))).))))).....))))))...((((((......))))))..))).... (-24.54 = -24.43 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:56 2011