| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,260,280 – 9,260,385 |
| Length | 105 |
| Max. P | 0.569215 |
| Location | 9,260,280 – 9,260,385 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 69.56 |
| Shannon entropy | 0.56183 |
| G+C content | 0.42425 |
| Mean single sequence MFE | -20.74 |
| Consensus MFE | -11.98 |
| Energy contribution | -11.57 |
| Covariance contribution | -0.41 |
| Combinations/Pair | 1.39 |
| Mean z-score | -0.70 |
| Structure conservation index | 0.58 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.569215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9260280 105 + 21146708 UAUAAAUCCCCUUUGAAAAGGCAUAUAUAUAU----AUUCAC-CUGUGCCCCAUCCACAUCC------ACUCCAUUAACGUGGGUUUUAUGGCCCACUGGCGCCACACCA-UUUUAU ...................(((((((....))----))...(-(.(((..((((....((((------((.........))))))...))))..))).)).)))......-...... ( -19.30, z-score = -0.33, R) >droSim1.chr2R 7717761 109 + 19596830 UAUAAAUCCCCUUUGGAAAGGCAUAUAUAUAUAUAUAUUCAC-CUGUGCCCCACCCACAUCC------ACUCCAUUAACGUGGAUUUUAUGGCCUACUGGCGCCACACCA-UUUUAU .............(((...(((((((((....))))))...(-(.(((..(((.....((((------((.........))))))....)))..))).)).)))...)))-...... ( -21.10, z-score = -0.93, R) >droSec1.super_1 6783249 105 + 14215200 UAUAAAUCCCCUUUGGAAAGGCAUAUAUAUAU----AUUCAC-CUGUGCCCCACCCACAUCC------ACUCCAUUAACGUGGAUUUUAUGGCCUACUGGCGCCACACCA-UUUUAU ((((((.......(((...((((((.......----......-.))))))....))).((((------((.........))))))))))))(((....))).........-...... ( -19.54, z-score = -0.61, R) >droYak2.chr2R 13442392 107 - 21139217 UAUAAAUCCCCUUUGGAAAGGCAUAUAU--------AUUUAG-CUGUGCCACACCCACAUCCACAGCUACUCCAUUAACCUGGGUUUUAUGGCCUACUGGCGCCCCACCA-UUUUAU .............(((...(((......--------...(((-(((((.............))))))))...(((.(((....)))..)))(((....))))))...)))-...... ( -24.12, z-score = -0.87, R) >droEre2.scaffold_4845 6035601 102 - 22589142 UGUAAAUCCCCUUUGGAGAGGCAUAUAC--------AUUCAC-CUGUGCCACAUCCACACCC------ACUCCAUUAACGUGGGUUUUAUGGCCUACUGGCGCCCCACCACUUUUAU .(((((.......((((..((((((...--------......-.))))))...)))).((((------((.........))))))))))).(((....)))................ ( -24.50, z-score = -1.11, R) >droGri2.scaffold_15245 10779156 98 + 18325388 -----------UCCACAUAUGCAUACAAAU-----UACCAAUAUUAUAGUGUAUUCAUAAAUUUAAAAAUUUCACUUUCGUAGGCACAAUCAGCAUUUGGGGCAGCAAUGUGGC--- -----------.((((((.(((...(((((-----......(((...((((.....................))))...))).((.......)))))))..)))...)))))).--- ( -15.90, z-score = -0.36, R) >consensus UAUAAAUCCCCUUUGGAAAGGCAUAUAUAU______AUUCAC_CUGUGCCCCACCCACAUCC______ACUCCAUUAACGUGGGUUUUAUGGCCUACUGGCGCCACACCA_UUUUAU .............(((...(((......................((((.......))))...........(((((....))))).......(((....))))))...)))....... (-11.98 = -11.57 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:53 2011