| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,233,475 – 9,233,569 |
| Length | 94 |
| Max. P | 0.966153 |
| Location | 9,233,475 – 9,233,569 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 58.62 |
| Shannon entropy | 0.57916 |
| G+C content | 0.31452 |
| Mean single sequence MFE | -17.84 |
| Consensus MFE | -5.91 |
| Energy contribution | -9.14 |
| Covariance contribution | 3.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.66 |
| Structure conservation index | 0.33 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.76 |
| SVM RNA-class probability | 0.966153 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9233475 94 + 21146708 CUGAAACGUGUCCAAAAGUAUGC----AUUUUGCAAUCAAUUUCACUGCAUACCUUUGCACAUGUUUUUCAAUUUCCAUUGCUUGUUUUUUCAGCAGU ..(((((((((.((((.((((((----(..................))))))).)))).))))))))).........((((((.(......))))))) ( -23.07, z-score = -3.11, R) >droYak2.chr2R 13414438 90 - 21139217 -UGAAACGUGUGCAAAAGUAUGCUAUUAUUUCAUAAUCAAUUUCACUGCAUAGUUUUGGACACGUUUUUUGAUCUGCCAUUUC---UCUGUAAA---- -.(((((((((.(((((.(((((........................))))).))))).)))))))))...............---........---- ( -22.66, z-score = -3.21, R) >droSim1.chr2R 7691141 74 + 19596830 UUAAAACGUGUCCAUUAUU--------AUUUUGUAAUCAAUUUUAC---------------AUGCUUUCCAAUUUUCCUUGUUAGUUUUCU-AGCAGU ...................--------....(((((......))))---------------)................(((((((....))-))))). ( -7.80, z-score = -1.67, R) >consensus _UGAAACGUGUCCAAAAGUAUGC____AUUUUGUAAUCAAUUUCACUGCAUA__UUUG_ACAUGUUUUUCAAUUUCCCUUGUU_GUUUUCU_AGCAGU ..(((((((((.((((..(((((.......(((....))).......)))))..)))).))))))))).............................. ( -5.91 = -9.14 + 3.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:49 2011