| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,729,275 – 2,729,394 |
| Length | 119 |
| Max. P | 0.703733 |
| Location | 2,729,275 – 2,729,394 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.46 |
| Shannon entropy | 0.25605 |
| G+C content | 0.39302 |
| Mean single sequence MFE | -29.32 |
| Consensus MFE | -21.96 |
| Energy contribution | -22.72 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.46 |
| SVM RNA-class probability | 0.703733 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2729275 119 - 23011544 UGGUAAUUGCCAAUGCAGUGGAUUAAUAAUAGACAAUUACACUUGACUCUACUCGUAGGUAUCGUAA-AAGCUGUCUAUGGGAAUUCCGAUUUGGCGGCUUUAAACUCUAUUGGCAGUUG ...((((((((((((.(((.....................((...((.(((....)))))...)).(-((((((((.((.((....)).))..)))))))))..))).)))))))))))) ( -33.30, z-score = -2.46, R) >droSim1.chr2L 2689562 107 - 22036055 UGGUAAUUGCCAAUGCAGUGGAUUAAUAAUAGACAAU------------UACUCGUGAGUAUCGUAA-AAGCUGUCUAUGGGAAUUCCGACUUGGCGGCUUUAAACUCCAUUGGCAUUUG ...(((.((((((((.(((.............((...------------((((....))))..)).(-((((((((..(.((....)).)...)))))))))..))).)))))))).))) ( -30.00, z-score = -2.20, R) >droSec1.super_5 895496 107 - 5866729 UGGUAAUUGCCAAUGCAGUGGAUUAAUAAUAGACAAU------------UACUCGUGAGUAUCGUAA-AAGCUGUCUAUGGGAAUUCCGACUUGGCGGCUUUAAACUCCAUGGGUAUUUG ((((.(((((....)))))..))))........(((.------------(((((((((((......(-((((((((..(.((....)).)...)))))))))..))).)))))))).))) ( -28.80, z-score = -1.81, R) >droYak2.chr2L 2723570 114 - 22324452 UGGUAAUUGCCAAUGCAGUGGAUUAAUAAUAGGCAAUUACACU------UGACUAUAAAUAUUUCAGCAAGCUGUCUAUGGGAAUUCCAACUUGGCGGCUUUAAACUCCAGUGGCACUUG .......(((((.((.((((((.((.(.((((.(((......)------)).)))).).)).)))...((((((((....((....)).....))))))))...))).)).))))).... ( -26.30, z-score = -0.30, R) >droEre2.scaffold_4929 2781966 113 - 26641161 UGGUAAUUGCCAAUGCAGUGGAUUAAUAAUAGACAAUUACACU------UGACUAUAAAUAUUUAAG-AAGCUGUCUAUGGGAAUUCCGAAUUGGCGGCUUUAAACUCCAGUGGCAUUCG .(((....)))((((((.((((......((((.(((......)------)).))))..........(-((((((((..(.((....)).)...)))))))))....)))).).))))).. ( -28.20, z-score = -1.89, R) >consensus UGGUAAUUGCCAAUGCAGUGGAUUAAUAAUAGACAAUUACACU______UACUCGUAAGUAUCGUAA_AAGCUGUCUAUGGGAAUUCCGACUUGGCGGCUUUAAACUCCAUUGGCAUUUG .......((((((((.(((..............................((((....)))).......((((((((..(.((....)).)...))))))))...))).)))))))).... (-21.96 = -22.72 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:12:08 2011