| Sequence ID | dm3.chr2R |
|---|---|
| Location | 9,231,647 – 9,231,753 |
| Length | 106 |
| Max. P | 0.796812 |
| Location | 9,231,647 – 9,231,753 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | forward |
| Mean pairwise identity | 86.77 |
| Shannon entropy | 0.24844 |
| G+C content | 0.35924 |
| Mean single sequence MFE | -26.04 |
| Consensus MFE | -14.94 |
| Energy contribution | -17.58 |
| Covariance contribution | 2.64 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.59 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.72 |
| SVM RNA-class probability | 0.796812 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2R 9231647 106 + 21146708 CAUAAAUUUUACGUUUUCAAAA----AUAUGAAAAGACA---GGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGGCUGUCAUAGAUGGUAAUUUAUGGGGCCAUGACUUCA (((..........((((((...----...))))))....---(((((........((....))...((((.......))))(((((((....)))))))))))))))...... ( -23.70, z-score = -2.00, R) >droAna3.scaffold_13266 16539393 99 + 19884421 CAUAAAUUUGCCAUUUAAAAAAUGAAGCACAGAAGAGCGAGGGGGCCAUAAAAGAAAGAAAGUGAAACAGAUUAUGGCUGUCAUAGAUGGUAAUUUAUG-------------- ((((((((.((((((((.........((........))..((.((((((((....................)))))))).)).))))))))))))))))-------------- ( -25.95, z-score = -4.79, R) >droEre2.scaffold_4845 6005469 106 - 22589142 CAUAAAUUUCACGUUUUCAAAA----AUAUGAAAAGGCA---GGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGGCUGUCAUAGAUGGUUAUUUAUGGGGCCAUGGCUUCA ......(((((..(((....))----)..)))))((.((---(((((........((....))....((....(((((((((...)))))))))...))))))).)).))... ( -27.40, z-score = -2.20, R) >droYak2.chr2R 13412532 106 - 21139217 CAUAAAUUUCACGUUUUCAAAA----AUAUGAAAAGGCA---GGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGGCUGUCAUAGAUGGUAAUUUAUGGGGCCAUGGCUUCA ......(((((..(((....))----)..)))))((.((---(((((........((....))...((((.......))))(((((((....)))))))))))).)).))... ( -26.80, z-score = -2.12, R) >droSec1.super_1 6754715 106 + 14215200 CAUAAAUUUCACGUUUUCAAAA----AUAUGAAAAGGCA---GGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGGCUGUCAUAGAUGGUAAUUUAUGGGGGCAUGGCUUCA ...........(.((((((...----...)))))).).(---(((((((((....((....))........)))))(((.((((((((....)))))))).)))..))))).. ( -26.00, z-score = -2.18, R) >droSim1.chr2R 7689287 106 + 19596830 CAUAAAUUUCACGUUUUCAAAA----AUAUGAAAAGGCA---GGCCCAUAAAAAAGAGAAAGUGAAACAGAUUAUGGCUGUCAUAGAUGGUAAUUUAUGGGGCCAUGGCUUCA ......((((((.(((((....----.((((....((..---..)))))).....))))).)))))).((.((((((((.((((((((....))))))))))))))))))... ( -26.40, z-score = -2.24, R) >consensus CAUAAAUUUCACGUUUUCAAAA____AUAUGAAAAGGCA___GGCCCAUAAAAAAGCGAAAGUGAAACAGAUUAUGGCUGUCAUAGAUGGUAAUUUAUGGGGCCAUGGCUUCA ......((((((.((((((..........))))))(((.....)))...............))))))....((((((((.((((((((....))))))))))))))))..... (-14.94 = -17.58 + 2.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 22:19:48 2011